index
:
gn-guile
main
GNU Guile API and web service support for GeneNetwork
about
summary
refs
log
tree
commit
diff
log msg
author
committer
range
path:
root
/
scripts
/
precompute
Age
Commit message (
Expand
)
Author
2024-06-18
Started on run-gemma
Pjotr Prins
2024-05-21
Writing json-ld
Pjotr Prins
2024-05-16
Add json meta record
Pjotr Prins
2024-05-16
Write json file for traits
Pjotr Prins
2024-05-16
Use main when running script
Pjotr Prins
2024-05-14
Add missing strain. Remove unused call
Pjotr Prins
2024-05-13
Write out JSON as a string for traits
Pjotr Prins
2024-05-13
Preparing BXD named for strain output in JSON
Pjotr Prins
2024-05-13
Start on json output for strains
Pjotr Prins
2024-05-13
Simplified a bit and batch size 500 appears to work alright
Pjotr Prins
2024-05-13
Batch run getting traits
Pjotr Prins
2024-05-12
list-traits handle CLI options --start-id and --next
Pjotr Prins
2024-05-09
Full test for whether a data-id belongs to the BXD
Pjotr Prins
2024-05-08
Use match to select for BXD traits
Pjotr Prins
2024-05-08
Collate trait values
Pjotr Prins
2024-05-08
List all traits
Pjotr Prins
2024-05-07
list traits: remove unused lines
Pjotr Prins
2024-05-07
Fetch a batch of traits so we can process faster
Pjotr Prins
2024-05-05
Trait IDs fetch in batch
Pjotr Prins
2024-05-05
List data-ids (trait ids) for a batch
Pjotr Prins
2024-05-03
README: precompute
Pjotr Prins
2024-01-06
Tracking metadat for GN DB
Pjotr Prins
2024-01-05
Update ProbeSetXRef to show work
Pjotr Prins
2024-01-05
Precompute will run gemma and update the DB status
Pjotr Prins
2024-01-04
Call precompute with population name - BXD only, for now
Pjotr Prins
2024-01-01
Run gemma-wrapper with metadata
Pjotr Prins
2023-12-21
Precompute
Pjotr Prins
2023-12-02
Mysql: check database is running. And some comments
Pjotr Prins
2023-12-02
Run gemma
Pjotr Prins
2023-11-24
Handle genotypes in gemma module
Pjotr Prins
2023-11-24
Fetch genotype inds from json file
Pjotr Prins
2023-11-21
Adding GEMMA
Pjotr Prins
2023-11-19
Iterating through hits
Pjotr Prins
2023-11-19
Iterate precompute datasets
Pjotr Prins
2023-11-18
Get first BXD dataset for precompute
Pjotr Prins
2023-11-18
Reorganize DB handler and fetch first dataset
Pjotr Prins
2023-11-17
Now we have a list of strain names for the BXD
Pjotr Prins
2023-11-17
First implementation of DB handler
Pjotr Prins
2023-11-16
Move procedures into mysql.scm and add documentation
Pjotr Prins
2023-11-16
Transform SQL output
Pjotr Prins
2023-11-15
Return list of BXD
Pjotr Prins
2023-11-14
Started on precompute script
Pjotr Prins
2023-11-10
Preparing for precompute runner
Pjotr Prins