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AgeCommit message (Expand)Author
2024-06-27Run gemma-wrapper in a containerPjotr Prins
2024-06-27Simplified gemma runnerPjotr Prins
2024-06-26Read pheno JSON file and write out pheno file for gemmaPjotr Prins
2024-06-18Started on run-gemmaPjotr Prins
2024-05-31Update documentation.Alexander_Kabui
2024-05-31Update docs for gn-guile repo path.Alexander_Kabui
2024-05-21Writing json-ldPjotr Prins
2024-05-16Add json meta recordPjotr Prins
2024-05-16Write json file for traitsPjotr Prins
2024-05-16Use main when running scriptPjotr Prins
2024-05-14Add missing strain. Remove unused callPjotr Prins
2024-05-13Write out JSON as a string for traitsPjotr Prins
2024-05-13Preparing BXD named for strain output in JSONPjotr Prins
2024-05-13Start on json output for strainsPjotr Prins
2024-05-13Simplified a bit and batch size 500 appears to work alrightPjotr Prins
2024-05-13Batch run getting traitsPjotr Prins
2024-05-12list-traits handle CLI options --start-id and --nextPjotr Prins
2024-05-09Full test for whether a data-id belongs to the BXDPjotr Prins
2024-05-08Use match to select for BXD traitsPjotr Prins
2024-05-08Collate trait valuesPjotr Prins
2024-05-08List all traitsPjotr Prins
2024-05-07list traits: remove unused linesPjotr Prins
2024-05-07Fetch a batch of traits so we can process fasterPjotr Prins
2024-05-05Trait IDs fetch in batchPjotr Prins
2024-05-05List data-ids (trait ids) for a batchPjotr Prins
2024-05-03README: precomputePjotr Prins
2024-02-12Change lmm mode to 9Pjotr Prins
2024-01-06Tracking metadat for GN DBPjotr Prins
2024-01-05Remove extra check and debug flag for gemma runPjotr Prins
2024-01-05Add example filePjotr Prins
2024-01-05Update ProbeSetXRef to show workPjotr Prins
2024-01-05Precompute will run gemma and update the DB statusPjotr Prins
2024-01-04Use tmpdir and tmp files for transient dataPjotr Prins
2024-01-04Use tmpfn for pheno outputPjotr Prins
2024-01-04Call precompute with population name - BXD only, for nowPjotr Prins
2024-01-01Run gemma-wrapper with metadataPjotr Prins
2023-12-22Document rebranding nginx configPjotr Prins
2023-12-21PrecomputePjotr Prins
2023-12-03Set version to 4.0.0Pjotr Prins
2023-12-02Mysql: check database is running. And some commentsPjotr Prins
2023-12-02Run gemmaPjotr Prins
2023-11-24Handle genotypes in gemma modulePjotr Prins
2023-11-24Fetch genotype inds from json filePjotr Prins
2023-11-21Adding GEMMAPjotr Prins
2023-11-19Iterating through hitsPjotr Prins
2023-11-19Iterate precompute datasetsPjotr Prins
2023-11-18Get first BXD dataset for precomputePjotr Prins
2023-11-18Reorganize DB handler and fetch first datasetPjotr Prins
2023-11-17Now we have a list of strain names for the BXDPjotr Prins
2023-11-17First implementation of DB handlerPjotr Prins
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