diff options
Diffstat (limited to 'scripts')
| -rwxr-xr-x | scripts/precompute/list-traits-to-compute.scm | 10 |
1 files changed, 9 insertions, 1 deletions
diff --git a/scripts/precompute/list-traits-to-compute.scm b/scripts/precompute/list-traits-to-compute.scm index 5c3dfa3..3e2acb3 100755 --- a/scripts/precompute/list-traits-to-compute.scm +++ b/scripts/precompute/list-traits-to-compute.scm @@ -167,7 +167,15 @@ The following is produced by gemma-wrapper as metadata id-traits) ;; --- create the json output as a file (for-each (lambda (r hit) - (let [(probeset-id (assoc-ref hit "ProbeSetId"))] + (let [(probeset-id (assoc-ref hit "ProbeSetId")) + (data-id (assoc-ref hit "DataId")) + (data-id-str (int-to-string data-id)) + (probesetfreeze-id (assoc-ref hit "ProbeSetFreezeId")) + (probeset-id (assoc-ref hit "ProbeSetId")) + (trait (get-trait db probeset-id)) + (trait-name (assoc-ref trait "Name")) + (name (dataset-name db probesetfreeze-id)) + ] (match r ((id . recs) (if (has-bxd? recs) (write-json-ld id probeset-id recs) |