diff options
Diffstat (limited to 'gn/data/hits.scm')
| -rw-r--r-- | gn/data/hits.scm | 13 |
1 files changed, 12 insertions, 1 deletions
diff --git a/gn/data/hits.scm b/gn/data/hits.scm index 5108bd0..29d377b 100644 --- a/gn/data/hits.scm +++ b/gn/data/hits.scm @@ -15,6 +15,7 @@ #:export ( get-precompute-hit set-precompute-hit-status! + update-precompute! )) (define (get-precompute-hit db prev-id) @@ -22,9 +23,19 @@ (get-row db)) (define (set-precompute-hit-status! db data-id-str status-str) - "Set status of precompute record - typically 'RUN' or 'NON-BXD'. + "Set status of precompute record - typically from NULL to 'GEMMA-START' or 'NON-BXD'. +On completion it is set to 'GEMMA-DONE'. This is a temporary measure to get precompute going. Note we are counting on automated MariaDB transactions to not compete." (dbi-query db (string-append "UPDATE ProbeSetXRef SET Locus_old=\"" status-str "\" WHERE DataId=" data-id-str " AND Locus_old is NULL")) (ensure db) ) + +;; MariaDB [db_webqtl]> UPDATE ProbeSetXRef SET Locus_old=Locus,LRS_old=LRS,Locus="new",LRS=9.9,pValue=1.0,additive=1.0 WHERE ProbeSetFreezeId=1 AND DataId=2 AND Locus_old="GEMMA-START" ; + +(define (update-precompute! db data-id-str status-str locus lrs pvalue, additive) + "Once precompute is run we can update the table moving old values and plugging in the new. +" + (dbi-query db (string-append "UPDATE ProbeSetXRef SET Locus_old=Locus,LRS_old=LRS,Locus=\"" locus "\",LRS=" lrs ",pValue=" pvalue ",additive=" additive " WHERE DataId=" data-id-str " AND Locus_old is \"GEMMA-START\"")) + (ensure db) + ) |