diff options
Diffstat (limited to 'gn/data/dataset.scm')
| -rw-r--r-- | gn/data/dataset.scm | 20 |
1 files changed, 20 insertions, 0 deletions
diff --git a/gn/data/dataset.scm b/gn/data/dataset.scm index 5f6bb0f..6b2292a 100644 --- a/gn/data/dataset.scm +++ b/gn/data/dataset.scm @@ -4,6 +4,7 @@ #:use-module (ice-9 iconv) #:use-module (ice-9 receive) #:use-module (ice-9 string-fun) + #:use-module (srfi srfi-1) #:use-module (dbi dbi) #:use-module (gn db mysql) #:use-module (gn data group) @@ -13,6 +14,7 @@ #:export ( dataset-name get-bxd-publish-list + get-bxd-publish-values-list )) (define (get-dataset db probesetfreeze-id) @@ -30,3 +32,21 @@ (let [(query "SELECT Id,PhenotypeId,DataId FROM PublishXRef WHERE InbredSetId=1")] (dbi-query db query) (get-rows db '()))))) + +(define* (get-bxd-publish-values-list dataid #:key used-for-mapping?) + (call-with-db + (lambda (db) + (let [(query (string-append "SELECT Strain.Name, PublishData.value FROM Strain, PublishData WHERE PublishData.Id=" dataid " and Strain.Id=StrainID;"))] + (dbi-query db query) + (if used-for-mapping? + (remove null? (pk (get-rows-apply db + (lambda (r) + (if (string-contains (assoc-ref r "Name") "BXD") + `(("Name" . ,(assoc-ref r "Name")) ("value" . ,(assoc-ref r "value"))) + '() ) ;; return empty on no match + ) '()))) + (get-rows db '()) + ))))) + + +;; (define ids (db-get-rows-apply db (lambda (r) `(,(assoc-ref r \"StrainId\") . ,(assoc-ref r \"Name\"))) '())) |