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| author | Pjotr Prins | 2024-06-27 05:34:00 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2024-06-27 05:34:00 -0500 |
| commit | 1b37b7738a4c756503ceaaa2645592521abd86f3 (patch) | |
| tree | 6225963cfc2f582b005f78b390b141903028ee99 /scripts | |
| parent | 9708991177a8450f8c17dad732f35a4b9c95c287 (diff) | |
| download | gn-guile-1b37b7738a4c756503ceaaa2645592521abd86f3.tar.gz | |
Run gemma-wrapper in a container
Diffstat (limited to 'scripts')
| -rwxr-xr-x | scripts/precompute/run-gemma.scm | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/scripts/precompute/run-gemma.scm b/scripts/precompute/run-gemma.scm index 48222b4..e6a4e26 100755 --- a/scripts/precompute/run-gemma.scm +++ b/scripts/precompute/run-gemma.scm @@ -9,7 +9,7 @@ Run from base dir with and with some extra paths (for gemma) -guix shell -C -F xz tar time parallel gemma coreutils-minimal guile guile-dbi guile-json ruby --expose=/home/wrk/iwrk/opensource/code/genetics/gemma-wrapper/=/gemma-wrapper --expose=/home/wrk/iwrk/opensource/code/genetics/gemma/=/gemma -- env TMPDIR=tmp guile -L . -e main -s ./scripts/precompute/run-gemma.scm test +~/opt/guix-pull/bin/guix shell -C -F xz tar time parallel coreutils-minimal guile guile-dbi guile-json ruby --expose=/home/wrk/iwrk/opensource/code/genetics/gemma-wrapper/=/gemma-wrapper --expose=/home/wrk/iwrk/opensource/code/genetics/gemma/=/gemma -- env TMPDIR=tmp GEMMA_COMMAND=/gemma/bin/gemma-0.98.5-linux-static-debug guile -L . -e main -s ./scripts/precompute/run-gemma.scm !# |