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| author | Pjotr Prins | 2023-08-20 13:09:03 +0200 |
|---|---|---|
| committer | Pjotr Prins | 2023-08-20 13:09:03 +0200 |
| commit | 66c26676c938e6ba35440bcb2e851fb025549ed0 (patch) | |
| tree | 3b30b828563188802f6ed81ab2cd5eb5e33f0415 /gn/db | |
| parent | dcc41148727ec5f68fbeb0504a295981728327a1 (diff) | |
| download | gn-guile-66c26676c938e6ba35440bcb2e851fb025549ed0.tar.gz | |
Add gnid to species - still a bug
Diffstat (limited to 'gn/db')
| -rw-r--r-- | gn/db/sparql.scm | 22 |
1 files changed, 16 insertions, 6 deletions
diff --git a/gn/db/sparql.scm b/gn/db/sparql.scm index 0e8c938..fd779c6 100644 --- a/gn/db/sparql.scm +++ b/gn/db/sparql.scm @@ -13,6 +13,7 @@ #:export (memo-sparql-species memo-sparql-species-meta + sparql-species-meta memo-sparql-wd-species-info compile-species get-rows @@ -180,6 +181,14 @@ SELECT ?species ?p ?o WHERE { (define memo-sparql-species-meta (memoize2 sparql-species-meta)) +#! +dump-species-metadata.ttl:gn:Axbxa rdf:type gnc:inbredSet . +dump-species-metadata.ttl:gn:Axbxa rdfs:label "AXB/BXA Family" . +dump-species-metadata.ttl:gn:Axbxa gnt:family "Reference Populations (replicate average, SE, N)" . +dump-species-metadata.ttl:gn:Axbxa gnt:mappingMethod "AXBXA" . +dump-species-metadata.ttl:gn:Axbxa gnt:code "AXB" . +dump-species-metadata.ttl:gn:Axbxa gnt:belongsToSpecies gn:Mus_musculus . +!# (define (get-values names row) "Get values by name from a resultset row" @@ -194,17 +203,18 @@ SELECT ?species ?p ?o WHERE { (define (compile-species recs rows) "Compile a matrix of species triples into records" (for-each (lambda (r) - (let* ([s (car r)] + (let* ([species (car r)] [v (cdr (cdr r))] [p (car (cdr r))] [nrec '()] - [kv (assoc s recs)]) ; find record to fill based on subject - (if (not kv) - (set! nrec '()) - (set! nrec (cdr kv)) + [kvs (assoc species recs)]) ; find record to fill based on subject + ;; for each gnid add value pair + (if (not kvs) + (set! nrec `(("gnid" ,species))) + (set! nrec (cdr kvs)) ) (set! nrec (assoc-set! nrec p v)) - (set! recs (assoc-set! recs s nrec)) + (set! recs (assoc-set! recs species nrec)) )) rows) recs) |