wikidata: build first query

1 files changed, 29 insertions, 0 deletions

diff --git a/gn/db/sources/wikidata.scm b/gn/db/sources/wikidata.scm
new file mode 100644
index 0000000..7397426
--- /dev/null
+++ b/gn/db/sources/wikidata.scm
@@ -0,0 +1,29 @@
+#!
+
+Wikidata queries
+
+!#
+
+(define-module (gn db sources wikidata)
+)
+
+(define ps-encoded-by "ps:P702")
+(define wdt-instance-of "wdt:P31")
+(define wdt-in-taxon "wdt:P703")
+(define wd-human "wd:Q15978631")
+(define wd-mouse "wd:Q83310")
+(define wd-rat "wd:Q184224")
+(define wd-gene "wd:Q7187")
+
+(define (wikidata_query_geneids gene_name)
+  "Return the wikidata identifiers pointing to genes of listed species"
+  (string-append
+     "SELECT DISTINCT ?wikidata_id
+            WHERE {
+              ?wikidata_id " wdt-instance-of " " wd-gene ";
+                           " wdt-in-taxon " ?species .
+              VALUES (?species) { (" wd-human " ) ( " wd-mouse" ) ( " wd-rat" ) } .
+              ?wikidata_id rdfs:label \"" gene_name "\"@en .
+        }
+"
+              ))