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How to run the Xapian indexing script
Change to Arun's user:
su aruni
Remove old xapian directory + contents:
sudo -u aruni rm -r /export/data/genenetwork/xapian
Run guix shell:
/home/zas1024/opt/guix/bin/guix shell --container --network --share=/export/data/genenetwork/ --development --file=guix.scm
Run the indexer script:
env PYTHONPATH=. python3 scripts/index-genenetwork /export/data/genenetwork/xapian mysql://webqtlout:webqtlout@127.0.0.1:3306/db_webqtl
OR Put the following in a shell script and run as Arun
rm -r /export/data/genenetwork/xapian && /home/zas1024/opt/guix/bin/guix shell --container --network --share=/export/data/genenetwork/ --development --file=guix.scm -- env PYTHONPATH=. python3 scripts/index-genenetwork /export/data/genenetwork/xapian mysql://webqtlout:webqtlout@127.0.0.1:3306/db_webqtl
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