blob: 455e832fb9bf544efaea448335753c7e01ab9de6 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
|
# Starting GN1
On tux01 GN1 is running inside a Guix container.
Start a screen and run the guix deploy script. See the README file in
gn1@tux01:~/production/gnshare/gn
# Guix
At this point GN1 is fixed at Feb 2021:
guix: 1.2.0-12.dffc918
guix-past: 159be3d7e86e1f22b2b7b1efc938ed63120dc973
guix-bioinformatics: 697a66bf0e897a101e8e3cefbaf250491039fe93
# Building
On an update of guix the build may fail. Try
```
~/opt/guix-gn1/bin/guix build
-L /home/gn1/guix-past/modules/ \
-L /home/gn1/guix-bioinformatics/ \
genenetwork1
```
## Updating mariadb connection on lily
```
restart apache in lily
[root@lily base]# /etc/init.d/httpd restart
Stopping httpd: [ OK ]
Starting httpd: [ OK ]
[root@lily base]# pwd
/gnshare/gn/web/webqtl/base
[root@lily base]#
/gnshare/gn/web/webqtl/base/webqtlConfigLocal.py
#######################################'
# Environment Variables - private
#########################################
# sql_host = '[1]tux02.uthsc.edu'
# sql_host = '128.169.4.67'
sql_host = '172.23.18.213'
SERVERNAME = sql_host
MYSQL_SERVER = sql_host
DB_NAME = 'db_webqtl'
DB_USER = 'x'
DB_PASSWD = 'x'
MYSQL_UPDSERVER = sql_host
DB_UPDNAME = 'db_webqtl'
DB_UPDUSER = 'x'
DB_UPDPASSWD = 'x'
GNROOT = '/gnshare/gn/'
PythonPath = '/usr/bin/python'
PIDDLE_FONT_PATH =
'/usr/lib/python2.4/site-packages/piddle/truetypefonts/'
```
SQL may also need to be updated here:
=> /gnshare/gn/web/webqtl/base/webqtlConfigLocal.py
=> /gnshare/gn/web/infoshare/includes/config.html
=> /gnshare/gn/web/infoshare/includes/db.inc
|