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# Starting GN1
The GN1 repos are at
=> https://github.com/genenetwork/genenetwork1
Branches are:
* master: my main branch - used in pjotr-test
* lily: running but almost discontinued
* production: on tux01
Note that there are some hard coded paths/IPs - so simply merging is not a great idea.
On tux01 GN1 is running inside a Guix container.
Start a screen and run the guix deploy script. See the README file in
gn1@tux01:~/production/gnshare/gn
# Guix
At this point GN1 is fixed at Feb 2021:
guix: 1.2.0-12.dffc918
guix-past: 159be3d7e86e1f22b2b7b1efc938ed63120dc973
guix-bioinformatics: 697a66bf0e897a101e8e3cefbaf250491039fe93
# Building
On an update of guix the build may fail. Try
```
~/opt/guix-gn1/bin/guix build
-L /home/gn1/guix-past/modules/ \
-L /home/gn1/guix-bioinformatics/ \
genenetwork1
```
## Updating mariadb connection on lily
```
restart apache in lily
[root@lily base]# /etc/init.d/httpd restart
Stopping httpd: [ OK ]
Starting httpd: [ OK ]
[root@lily base]# pwd
/gnshare/gn/web/webqtl/base
[root@lily base]#
/gnshare/gn/web/webqtl/base/webqtlConfigLocal.py
#######################################'
# Environment Variables - private
#########################################
# sql_host = '[1]tux02.uthsc.edu'
# sql_host = '128.169.4.67'
sql_host = '172.23.18.213'
SERVERNAME = sql_host
MYSQL_SERVER = sql_host
DB_NAME = 'db_webqtl'
DB_USER = 'x'
DB_PASSWD = 'x'
MYSQL_UPDSERVER = sql_host
DB_UPDNAME = 'db_webqtl'
DB_UPDUSER = 'x'
DB_UPDPASSWD = 'x'
GNROOT = '/gnshare/gn/'
PythonPath = '/usr/bin/python'
PIDDLE_FONT_PATH =
'/usr/lib/python2.4/site-packages/piddle/truetypefonts/'
```
SQL may also need to be updated here:
=> /gnshare/gn/web/webqtl/base/webqtlConfigLocal.py
=> /gnshare/gn/web/infoshare/includes/config.html
=> /gnshare/gn/web/infoshare/includes/db.inc
## Updating from lily
Git sync
```
gn1@tux01:~/production/gnshare/gn-pjotr-test$
git checkout lily
git pull pjotr@lily.genenetwork.org:/gnshare/gn/
```
Menu sync
```
gn1@tux01:~/production/gnshare/gn-pjotr-test$
scp pjotr@lily.genenetwork.org:/gnshare/gn/web/javascript/*.js web/javascript/
git status
```
## Updating httpd.conf
To update the httpd.conf you need to edit the system file in guix-bioinformatics. It can be built with
```
guix build -L ~/guix-past/modules/ -L ~/guix-bioinformatics/ -e '(@ (gn services gn1-httpd-config) GN1-httpd-config)'
```
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