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# Migrate GN1 Clustering
GeneNetwork1 has clustering output that we want to migrate to GN2. For example, go to
=> http://gn1-lily.genenetwork.org/ GN1 on Lily
Select Type -> CRTD mRNA data and do a search for 'synap*'. Click on the top 10 results checkboxes and Add to the basket (add is an icon). Now click on 'Select all' and the 'Heat map' icons. Computation may take a while.
Next click on 'Cluster traits' and 'Redraw' map. This is the one we want in GN3/GN2!
=> ./heatmap.png
## Members
* fredm
* pjotr
## Useful links
=> https://github.com/genenetwork/genenetwork1/tree/master/web/webqtl/heatmap Implementation
## Implementation
As a first step the computations should move to GN3 with proper regression/unit testing scripts. Next wire them up as REST API endpoints and add it to the GN2 web interface:
- [ ] Move computation to GN3
- [ ] Create REST API endpoints
- [ ] Add regression/unit tests in GN3
- [ ] Add to GN2 web interface
@pjotr I couldn't quite figure out what "CRTD mRNA", so I selected "Cartilage mRNA" , to try and produce a heat map, and I did get some results.
The selected data was:
* Species: Mouse (mm10)
* Group: BXD Family
* Type: Cartilage mRNA
I got
=> http://gn1-lily.genenetwork.org/image/Heatmap_8CJbN7Iy.png the initial heatmap
and
=> http://gn1-lily.genenetwork.org/image/Heatmap_syjdiq5z.png the 'Cluster Traits' heatmap
is that anything like what I should expect?
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