blob: f8a12f638d02e039ea993433faec18ac9e9efd3e (
about) (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
|
# Genome Details
This file is probably misnamed.
*TODO*: Update name once we know where this fits
## Tags
* type: documentation, doc, docs
* assigned: fredm
* priority: docs
* status: open
* keywords: gn-uploader, uploader, genome
## Location
### centiMorgan (cM)
We no longer use centiMorgan in GeneNetwork
From the email threads:
```
> …
> Sorry, we now generally do not use centimorgans. Chr 19 is 57 cM
> using markers that exclude telomeres in most crosses.
> …
```
and
```
> …
> I know that cM is a bit more variable because it's not a direct measurement, …
> …
```
### Megabasepairs (Mbp)
The uploader will store any provided physical location values (in megabasepairs) in the
=> https://gn1.genenetwork.org/webqtl/main.py?FormID=schemaShowPage#Geno Geno table
specifically in the `Mb` field of that table.
|
