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# Deploying genecup
# Hosting
The source repo has moved to
=> https://git.genenetwork.org/genecup/
If you have ssh access you can push to the repo with
=> yourname@git.genenetwork.org:/home/git/public/genecup
# Deploy on tux02
On Tux02 as shepherd user I can build:
```
./guix/bin/guix build -L ~/services/genecup/guix-past/modules -L ~/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native -c 24 -M 8
```
To run genecup in a container we have a trick to include the source code by cd'ing into the built version
```
export EDIRECT_PUBMED_MASTER=/export2/PubMed
export TMPDIR=/export/ratspub/tmp
export NLTK_DATA=/export2/PubMed/nltk_data
# This version for the genecup guix profile which includes guix-bioinformatics, using genecup-channels.scm.
# shepherd@tux02:~/services/genecup$ ./guix/bin/guix build -L ~/services/genecup/guix-past/modules -L ~/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native -c 24 -M 8
cd /home/shepherd/services/genecup
cd $(/home/shepherd/services/genecup/guix/bin/guix build -L /home/shepherd/services/genecup/guix-past/modules -L /home/shepherd/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native -c 4)
/home/shepherd/services/genecup/guix/bin/guix shell -C -N --expose=/etc/ssl/certs --expose=$EDIRECT_PUBMED_MASTER --share=$TMPDIR -L /home/shepherd/services/genecup/guix-past/modules -L /home/shepherd/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native coreutils-minimal -- env TMPDIR=$TMPDIR EDIRECT_PUBMED_MASTER=$EDIRECT_PUBMED_MASTER NLTK_DATA=$NLTK_DATA ./server.py
```
That means you can also develop software running in a container with the last command by switching into a repo:
```
cd $repo
run last command using guix shell
```
The only problem, at this point, is that python is not in the path.
The alternative is to use a guix shell, as described in the README.md
=> https://git.genenetwork.org/genecup/tree/README.md
and port forward:
```
ssh -L 4200:127.0.0.1:4200 -f -N server
curl localhost:4200
```
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