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# Weekly meetings
In this document we will track tasks based of our weekly meetings. This list sets the agenda
on progress for the next week's meeting.
## 02-10-2024
## @felixm
* [ ] Use Aider to contribute and cover to Fred's coding. Share useful prompts.
* [ ] Feed relevant papers to GPT and find similar summary for other datasets. Start with C-Elegans.
## @bonfacem
* [ ] Share values with PJ.
* [ ] Assume LMDB files are transient. When hash doesn't exist, generate the hash for that dataset. Use LMDB to store key value pairs of hashes.
* [ ] Add dump script to gn-guile.
* [ ] Add Case Attributes in Virtuoso.
## @alex
* [ ] Push R/QTL2 to production
* [ ] Have R/QTL2 work for ITP
Nice to have:
* Think about editing publish data and consequent updates to LMDB.
## @pjotr
* Kickstart UTHSC VPN access for Felix and Alex.
## 01-20-2024
### @bonfacem
* [ ] Report: OpenAI on Aider - use AI for programming - discuss with @alexm
=> https://issues.genenetwork.org/topics/ai/aider
* [-] Metadata: Provide list of case attributes for BXD to @flisso
* [-] Code UI: GeneRIF and GenWiki should work from the mapping page - encourage people to use
- anyone logged in can edit
- If RIF does not exist point to GeneWiki
- If GeneWiki does not exist provide edit page
* [ ] Code export: Exporting traits to lmdb PublishData - @alexm helps with SQL
- missing data should not be an X
- run lmdb design (first code) by @pjotrp
- start exporting traits for Johannes (he will need to write a python reader)
* Later: Improve the work/dev container for @alexm
### @flisso
* [ ] Write: Uploader protocol. NOTES: Finished with C-elegans. Yet to test with other datasets.
* [ ] Script: Run Reaper
* [ ] Data: Case attributes - with @bonfacem
* [ ] Write: Create protocol to upload case attributes
### @alexm
* [ ] Code: Rqtl2 match Rqtl1: match scan changes. Notes: PR out and added tests.
* [ ] Bug: Fix pair scan. NOTES: Fixed it. But can't test it now since CD is down.
* Later: AI changes
### @Pjotr
* [ ] Code: Work on precompute with GEMMA (w. Jameson)
* [ ] Code: Take Bonface's trait files when they become available
## 01-27-2024
Last week's error with CD and production downtime:
* [ level 1] Container: Error messages when data not loaded in Virtuoso, Indexing.
* [ level 2] Sheepdog: Check services --- sheepdog. Health checkpoints.
* [ level 3] User feedback. Escalate errors correctly to the users, so they can report to coders
### @bonfacem
* [ ] Troubleshoot CD.
* [ ] Export files in lmdb. Yohannes read file in Python example
* [ ] Metadata: Provide list of case attributes for BXD to @flisso
* [ ] Aider: See if it can generate some guile and python. Give an example.
### @alexm
* [ ] UI for R/Qtl2.
### @flisso
* [ ] Look at Fred Python code for the uploader and report on this.
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