blob: a3eb5504b3950ebbff4c3c6e84110b55c6a9da9b (
about) (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
|
* Broken Guix on Tux04 Troubleshooting Log
Noticed at arount 15:30 (UTC-0500) that guix broke for no apparent reason and I
could no longer do ~guix pull~ without a "Segmentation fault" error.
I could not even do a ~guix search~ without the error.
Began today (2024-11-08UTC-0500) by attempting a pull, and still got the Segmentation fault.
Try checking out an older generation
#+begin_src sh
$ /home/fredm/opt/guix/bin/guix -p ~/opt/guix --list-generations
⋮
$ /home/fredm/opt/guix/bin/guix -p ~/opt/guix --delete-generations=46
⋮
Segmentation fault
$ /home/fredm/opt/guix/bin/guix -p ~/opt/guix --delete-generations=40..47
⋮
Segmentation fault
#+end_src
Try pulling with someone else's guix:
#+begin_src bash
/var/guix/profiles/per-user/aruni/current-guix/bin/guix --profile=/export3/local/home/fredm/opt/guix --channels=channels.scm
#+end_src
#+begin_example
(repl-version 0 1 1)
Backtrace:
1 (primitive-load "/gnu/store/2lpf5rl0dhq1v8wjfnfmglvr0p2?")
In ice-9/boot-9.scm:
2007:7 0 (error _ . _)
ice-9/boot-9.scm:2007:7: In procedure error:
inferior failed "/gnu/store/5rac7n9ya6qrpbz42gpn96sa47dkz7rj-guix-2394a7f5f"
#+end_example
Fine, maybe the issue is my profile: delete all links and do a ~guix gc~ to clear any issues.
Upgrade guix daemon
#+begin_src bash
$ sudo -i /var/guix/profiles/per-user/aruni/current-guix/bin/guix pull
⋮
$ sudo systemctl stop guix-daemon.service
$ sudo systemctl start guix-daemon.service
$ sudo systemctl status guix-daemon.service
#+end_src
Try again: No success.
Try:
#+begin_src shell
$ /var/guix/profiles/per-user/aruni/current-guix/bin/guix describe --format=channels > channels-aruni.scm
$ /var/guix/profiles/per-user/aruni/current-guix/bin/guix pull -C channels-aruni.scm -p /home/fredm/opt/guix
$ /home/fredm/opt/guix/bin/guix search python-requests
#+end_src
Okay, now that gives me an output!
Try pulling latest channels:
#+begin_src shell
$ /home/fredm/opt/guix/bin/guix pull -C channels.scm -p ~/opt/guix
⋮
Building from these channels:
guix-bioinformaticshttps://git.genenetwork.org/guix-bioinformatics 3659ecd
guix-forgehttps://git.systemreboot.net/guix-forge/ 9864821
guix-past https://gitlab.inria.fr/guix-hpc/guix-past 5fb77cc
guix https://git.savannah.gnu.org/git/guix.git 2394a7f
⋮
building /gnu/store/gzm7jb7hj2bmfhdjzsprar8lacz34ncr-guix-past.drv...
-builder for `/gnu/store/gzm7jb7hj2bmfhdjzsprar8lacz34ncr-guix-past.drv' failed with exit code 1
build of /gnu/store/gzm7jb7hj2bmfhdjzsprar8lacz34ncr-guix-past.drv failed
View build log at '/var/log/guix/drvs/gz/m7jb7hj2bmfhdjzsprar8lacz34ncr-guix-past.drv.gz'.
cannot build derivation `/gnu/store/rwarhjfc9kymw5k5wvl0pz658bmmmqvh-profile.drv': 1 dependencies couldn't be built
guix pull: error: build of `/gnu/store/rwarhjfc9kymw5k5wvl0pz658bmmmqvh-profile.drv' failed
#+end_src
Okay, view the logs:
#+begin_src sh
$ gunzip -kc /var/log/guix/drvs/gz/m7jb7hj2bmfhdjzsprar8lacz34ncr-guix-past.drv.gz
(repl-version 0 1 1)
Backtrace:
1 (primitive-load "/gnu/store/2lpf5rl0dhq1v8wjfnfmglvr0p2?")
In ice-9/boot-9.scm:
2007:7 0 (error _ . _)
ice-9/boot-9.scm:2007:7: In procedure error:
inferior failed "/gnu/store/5rac7n9ya6qrpbz42gpn96sa47dkz7rj-guix-2394a7f5f"
#+end_src
Oh boy!
How about we start with @aruni's channels and pin everything except
=guix-bioinformatics= in the code below:
#+begin_src scheme
(list (channel
(name 'guix-bioinformatics)
(url "https://git.genenetwork.org/guix-bioinformatics")
(branch "master"))
(channel
(name 'guix-forge)
(url "https://git.systemreboot.net/guix-forge/")
(branch "main")
(commit
"9864821f976b3de355138c12f287a19fdced67df")
(introduction
(make-channel-introduction
"0432e37b20dd678a02efee21adf0b9525a670310"
(openpgp-fingerprint
"7F73 0343 F2F0 9F3C 77BF 79D3 2E25 EE8B 6180 2BB3"))))
(channel
(name 'guix-past)
(url "https://gitlab.inria.fr/guix-hpc/guix-past")
(branch "master")
(commit
"5fb77cce01f21a03b8f5a9c873067691cf09d057")
(introduction
(make-channel-introduction
"0c119db2ea86a389769f4d2b9c6f5c41c027e336"
(openpgp-fingerprint
"3CE4 6455 8A84 FDC6 9DB4 0CFB 090B 1199 3D9A EBB5"))))
(channel
(name 'guix)
(url "https://git.savannah.gnu.org/git/guix.git")
(branch "master")
(commit
"b0b988c41c9e0e591274495a1b2d6f27fcdae15a")
(introduction
(make-channel-introduction
"9edb3f66fd807b096b48283debdcddccfea34bad"
(openpgp-fingerprint
"BBB0 2DDF 2CEA F6A8 0D1D E643 A2A0 6DF2 A33A 54FA")))))
#+end_src
Put the code above in =channels.scm= and retry:
#+begin_src sh
$ /home/fredm/opt/guix/bin/guix pull -C channels.scm -p ~/opt/guix
⋮
Building from these channels:
guix-bioinformaticshttps://git.genenetwork.org/guix-bioinformatics 3659ecd
guix-forgehttps://git.systemreboot.net/guix-forge/ 9864821
guix-past https://gitlab.inria.fr/guix-hpc/guix-past 5fb77cc
guix https://git.savannah.gnu.org/git/guix.git b0b988c
⋮
#+end_src
Success!
Okay, now, try rebuilding the container:
#+begin_src sh
$ env PATH="/home/fredm/opt/guix/bin:${PATH}" ./production-deploy.sh
#+end_src
Success!
Check that https://gn2-fred.genenetwork.org/ is up and running: Yes!
Okay. We are back!
|
