index
:
gn-gemtext
main
GeneNetwork gemtext knowledge base and issue tracker (mirror right now)
summary
refs
log
tree
commit
diff
log msg
author
committer
range
path:
root
/
issues
Mode
Name
Size
-rw-r--r--
BXD102xBXD077F1-error.gmi
799
log
plain
d---------
CI-CD
161
log
plain
-rw-r--r--
DOL-mapping.gmi
815
log
plain
-rw-r--r--
README.gmi
3511
log
plain
-rw-r--r--
TempDataSet-object-has-no-attribute.gmi
2248
log
plain
-rw-r--r--
add-bulklmm-feature.gmi
2505
log
plain
-rw-r--r--
add-collection-import.gmi
367
log
plain
-rw-r--r--
add-documentation-and-data-retrieval-for-AI-repo.gmi
403
log
plain
-rw-r--r--
add-edit-issue-link-in-tissue.gmi
608
log
plain
-rw-r--r--
add-generif-page.gmi
782
log
plain
-rw-r--r--
add-genotype-files-to-rdf.gmi
415
log
plain
-rw-r--r--
add-homology-track.gmi
1296
log
plain
-rw-r--r--
add-logging-to-rdf-endpoints.gmi
542
log
plain
-rw-r--r--
add-mapping-link.gmi
542
log
plain
-rw-r--r--
add-metadata-to-traits-page.gmi
4284
log
plain
-rw-r--r--
add-mouse-data-from-klaus.gmi
3158
log
plain
-rw-r--r--
add-pluto-notebooks.gmi
572
log
plain
-rw-r--r--
add-sample-size-to-rdf.gmi
182
log
plain
-rw-r--r--
add-search-select-export-to-datatables-table.gmi
1063
log
plain
-rw-r--r--
add-search-syntax-hints.gmi
694
log
plain
-rw-r--r--
add-share-datasets-htmx-page.gmi
1201
log
plain
-rw-r--r--
add-target-column-in-pcorrs-table.gmi
992
log
plain
-rw-r--r--
add-to-collection-error.gmi
2851
log
plain
-rw-r--r--
adding-principle-component-to-collection-error.gmi
1803
log
plain
-rw-r--r--
adding-traits-from-mapping.gmi
243
log
plain
-rw-r--r--
annotation.gmi
1601
log
plain
d---------
authentication_authorisation
636
log
plain
-rw-r--r--
authorisation.gmi
4802
log
plain
-rw-r--r--
autogenerate-documuntation-for-rdf.gmi
1889
log
plain
-rw-r--r--
automated-testing.gmi
5465
log
plain
-rw-r--r--
automatically-find-broken-links-on-gn2.gmi
1985
log
plain
d---------
binderlite
952
log
plain
-rw-r--r--
broken-build-xapian.gmi
320
log
plain
-rw-r--r--
broken-cd.gmi
1125
log
plain
-rw-r--r--
bugfix_coupling_current_app_and_db_utils.gmi
2351
log
plain
-rw-r--r--
buggy-use-of-urljoin.gmi
1707
log
plain
-rw-r--r--
cant-use-guix-bioinformatics-with-guix-pull.gmi
393
log
plain
-rw-r--r--
capture-data-on-BXDs-in-RDF.gmi
2714
log
plain
-rw-r--r--
capture-phenotype-state-in-a-hash.gmi
963
log
plain
-rw-r--r--
case-attr-edit-error.gmi
2555
log
plain
-rw-r--r--
cd-gn3-configurations.gmi
730
log
plain
-rw-r--r--
collections_count_bug.gmi
524
log
plain
-rw-r--r--
consecutive-crud-applications-when-uploading-data.gmi
722
log
plain
-rw-r--r--
cool-interfaces-we-should-emulate.gmi
1633
log
plain
-rw-r--r--
correlation-error.gmi
781
log
plain
-rw-r--r--
correlation-missing-file.gmi
1339
log
plain
-rw-r--r--
correlation-timing-out.gmi
496
log
plain
-rw-r--r--
correlation_speed_issue.gmi
3719
log
plain
-rw-r--r--
correlation_wrong_results.gmi
2455
log
plain
-rw-r--r--
correlations-all-samples.gmi
944
log
plain
-rw-r--r--
correlations-fewer-result-than-expected.gmi
244
log
plain
-rw-r--r--
correlations-return-fewer-results.gmi
2842
log
plain
-rw-r--r--
correlations-script-to-build-text-files.gmi
1720
log
plain
-rw-r--r--
correlations-time-out.gmi
2350
log
plain
-rw-r--r--
create-rdf-traits-page.gmi
695
log
plain
-rw-r--r--
create-ui-language-for-gn2.gmi
387
log
plain
-rw-r--r--
csv-error-ITP_10001-longevity-data-set.gmi
1973
log
plain
-rw-r--r--
csv-metadata-not-commented-out.gmi
1196
log
plain
-rw-r--r--
custom_data_for_scatterplot.gmi
721
log
plain
-rw-r--r--
data-upload.gmi
621
log
plain
d---------
data
42
log
plain
d---------
data_upload_gn
60
log
plain
-rw-r--r--
database-ProbeSetSE-schema-bug.gmi
2603
log
plain
-rw-r--r--
database-defects.gmi
1973
log
plain
-rw-r--r--
database-long-query-after-innodb-migration.gmi
5063
log
plain
-rw-r--r--
database-migrations.gmi
513
log
plain
-rw-r--r--
database-not-responding.gmi
18862
log
plain
-rw-r--r--
dataset_queried_twice.gmi
657
log
plain
-rw-r--r--
decouple-tasks-in-results-display.gmi
1552
log
plain
-rw-r--r--
default-search-query-in-search-field.gmi
474
log
plain
-rw-r--r--
demo-generif-data-in-sparql.gmi
297
log
plain
-rw-r--r--
deploy.gmi
1106
log
plain
d---------
design
46
log
plain
-rw-r--r--
do-bulk-query-for-correlation-results-display.gmi
726
log
plain
-rw-r--r--
do-not-conflict-with-random.gmi
783
log
plain
-rw-r--r--
document-all-virtuoso-instances.gmi
293
log
plain
-rw-r--r--
document-xapian-search-code-architecture.gmi
279
log
plain
-rw-r--r--
dump-genewiki-data-in-rdf.gmi
582
log
plain
-rw-r--r--
dump-genewiki-metadata.gmi
2262
log
plain
-rw-r--r--
dump-sample-data-to-lmdb.gmi
3003
log
plain
-rw-r--r--
edit-metadata-bugs.gmi
5257
log
plain
-rw-r--r--
editing-bug-brittle-fix-for-editing-metadata.gmi
2038
log
plain
-rw-r--r--
editing-bug-conflating-dataset_id-with-inbred_set_id.gmi
1921
log
plain
-rw-r--r--
editing-dataset-metadata.gmi
804
log
plain
-rw-r--r--
editing-delete-rejected-diffs-from-db.gmi
246
log
plain
-rw-r--r--
editing-show-edit-button-for-all.gmi
668
log
plain
-rw-r--r--
editing-show-last-edited.gmi
408
log
plain
-rw-r--r--
effect-size-for-gemma-is-a-must.gmi
720
log
plain
-rw-r--r--
enable-intergroup-analysis.gmi
1138
log
plain
-rw-r--r--
enter-key-in-global-search-field.gmi
754
log
plain
-rw-r--r--
error-handling-external-errors.gmi
1440
log
plain
-rw-r--r--
error-when-fetching-snps.gmi
3131
log
plain
-rw-r--r--
error-zooming-chromosome.gmi
1810
log
plain
-rw-r--r--
export-uploaded-data-to-RDF-store.gmi
3735
log
plain
-rw-r--r--
failing-menu-in-cd.gmi
402
log
plain
-rw-r--r--
failing-tests-on-gn2-20220803.gmi
1126
log
plain
d---------
features
46
log
plain
-rw-r--r--
fetch-pubmed-references-to-gnqa.gmi
1011
log
plain
-rw-r--r--
fetch-sample-data.gmi
2915
log
plain
-rw-r--r--
fetch-trait-names-for-phenotypes.gmi
1180
log
plain
-rw-r--r--
fetch_trait_data_using_genofiles.gmi
7695
log
plain
-rw-r--r--
fix-broken-builds-in-gn2-and-gn3.gmi
3722
log
plain
-rw-r--r--
fix-broken-utf8-chars.gmi
1378
log
plain
-rw-r--r--
fix-case-attribute-editing.gmi
1180
log
plain
-rw-r--r--
fix-case-attribute-work.gmi
908
log
plain
-rw-r--r--
fix-collection-export.gmi
1041
log
plain
-rw-r--r--
fix-correlation-table.gmi
758
log
plain
-rw-r--r--
fix-failing-MR-tests.gmi
785
log
plain
-rw-r--r--
fix-failing-gn2-tests.gmi
404
log
plain
-rw-r--r--
fix-genotype-filename-HSNIH-Palmer.gmi
742
log
plain
-rw-r--r--
fix-gn3-python-3.10-linting-errors.gmi
6579
log
plain
-rw-r--r--
fix-haplotype-name-overflow.gmi
398
log
plain
-rw-r--r--
fix-include-f1-parents-correlations.gmi
317
log
plain
-rw-r--r--
fix-load-rdf-script.gmi
1281
log
plain
-rw-r--r--
fix-missing-genotype-files-for-gemma.gmi
697
log
plain
-rw-r--r--
fix-scree-plot.gmi
646
log
plain
-rw-r--r--
fix-spam-entries-in-gn-auth-production.gmi
996
log
plain
-rw-r--r--
full-text-search.gmi
1307
log
plain
d---------
gemma
448
log
plain
-rw-r--r--
genecup-running-as-root.gmi
1841
log
plain
d---------
genenetwork
626
log
plain
d---------
genenetwork1
499
log
plain
-rw-r--r--
genenetwork2-account-registration-error.gmi
4894
log
plain
-rw-r--r--
genenetwork2-cd-sometimes-fails-to-restart.gmi
1059
log
plain
-rw-r--r--
generalize-tables.gmi
1208
log
plain
-rw-r--r--
geno-correlation-bug.gmi
866
log
plain
-rw-r--r--
genotype-html-page.gmi
384
log
plain
-rw-r--r--
genotype-metadata.gmi
349
log
plain
-rw-r--r--
global-search-connection-slow.gmi
774
log
plain
-rw-r--r--
global-search-results.gmi
771
log
plain
-rw-r--r--
global-search-unhandled-error.gmi
586
log
plain
-rw-r--r--
global_search_phenotypes.gmi
398
log
plain
d---------
gn-auth
335
log
plain
d---------
gn-uploader
438
log
plain
-rw-r--r--
gn-volt-genofiles-parsing-integration.gmi
765
log
plain
-rw-r--r--
gn1-annotation-page-is-broken.gmi
439
log
plain
-rw-r--r--
gn3-nginx-timeout.gmi
975
log
plain
-rw-r--r--
gn3-technical-debt.gmi
429
log
plain
-rw-r--r--
gn_llm_db_cache_integration.gmi
855
log
plain
d---------
gnbug
328
log
plain
d---------
gnqa
147
log
plain
d---------
gnqna
85
log
plain
-rw-r--r--
gnsoc-ci-rethink.gmi
3019
log
plain
-rw-r--r--
guixify-llm-system.gmi
139
log
plain
-rw-r--r--
handle-too-many-password-attempts.gmi
323
log
plain
-rw-r--r--
handling-resource-links-in-probeset-page.gmi
2544
log
plain
-rw-r--r--
htmx-error-handling.gmi
1152
log
plain
-rw-r--r--
implement-auth-to-gn-llm.gmi
368
log
plain
-rw-r--r--
implement-gn-markdown-editor-in-guile.gmi
824
log
plain
-rw-r--r--
implement-gn-markdown-editor.gmi
734
log
plain
-rw-r--r--
implement-parallel-correlation-with-rust.gmi
2363
log
plain
-rw-r--r--
implement-reference-rating-gn-llm.gmi
694
log
plain
-rw-r--r--
import_collections_popup_bug.gmi
1813
log
plain
-rw-r--r--
improve-menu-generation-and-move-it-to-gn3.gmi
1850
log
plain
-rw-r--r--
improve-presentation-of-search-results.gmi
915
log
plain
-rw-r--r--
improve-sparql-results.gmi
1027
log
plain
-rw-r--r--
incorrect-pmids.gmi
1047
log
plain
-rw-r--r--
integrate-feed-analyser.gmi
595
log
plain
-rw-r--r--
integrate_gn_llm_search.gmi
654
log
plain
-rw-r--r--
invalid-token-error.gmi
3660
log
plain
-rw-r--r--
linking_genotype-files-to-datasets.gmi
3446
log
plain
-rw-r--r--
make-partial-correlation-tables-searchable.gmi
875
log
plain
-rw-r--r--
make-xapian-index-rebuild-conditional-on-database-checksums.gmi
879
log
plain
-rw-r--r--
mapping-haley-knott-regression-chromosome-zoom-in-bug.gmi
631
log
plain
-rw-r--r--
mapping-horizontal-scroll.gmi
335
log
plain
-rw-r--r--
mapping-zoom-bug.gmi
1005
log
plain
-rw-r--r--
materialised-views-for-correlations.gmi
3955
log
plain
-rw-r--r--
merge-gnqa-to-production.gmi
351
log
plain
-rw-r--r--
metadata-caching-bug.gmi
2816
log
plain
-rw-r--r--
metadata-edits-improvements.gmi
5936
log
plain
d---------
mgamma
178
log
plain
-rw-r--r--
minor-phenotype-page-ui-updates.gmi
1120
log
plain
-rw-r--r--
misc-ui-fixes.gmi
1608
log
plain
-rw-r--r--
missing-ci-cd-definitions-for-service-daemons.gmi
1290
log
plain
-rw-r--r--
missing-python-modules-for-gn3.gmi
329
log
plain
-rw-r--r--
model-gn-menu-in-rdf.gmi
362
log
plain
-rw-r--r--
modelling-phenotype-data.gmi
7224
log
plain
-rw-r--r--
move-data-endpoint-from-gn2-to-gn3.gmi
1307
log
plain
-rw-r--r--
move-dataset-metadata-to-git.gmi
373
log
plain
-rw-r--r--
move-racket-gn-rest-api-to-guile.gmi
938
log
plain
-rw-r--r--
move-search-to-xapian.gmi
1060
log
plain
-rw-r--r--
multi-trait-heatmap-failed.gmi
802
log
plain
-rw-r--r--
non-deterministic-gn3-setup-on-tux01.gmi
2155
log
plain
-rw-r--r--
notify-user-after-trait-edit.gmi
1047
log
plain
-rw-r--r--
order-entries-in-csv-dump.gmi
284
log
plain
-rw-r--r--
parsing_genotype_files.gmi
413
log
plain
-rw-r--r--
pca-changes.gmi
597
log
plain
-rw-r--r--
per-service-profile-for-shepherd-services.gmi
1510
log
plain
-rw-r--r--
phenotype-correlation-error.gmi
10055
log
plain
-rw-r--r--
pre-cache-datasets.gmi
917
log
plain
-rw-r--r--
prevent-weak-passwords.gmi
555
log
plain
-rw-r--r--
probeset-html-page.gmi
1206
log
plain
-rw-r--r--
probeset-metadata-upload.gmi
1144
log
plain
-rw-r--r--
provide-link-to-register-user-in-sign-in-page.gmi
663
log
plain
-rw-r--r--
public-inbox.gmi
298
log
plain
d---------
quality-control
830
log
plain
d---------
rdf
52
log
plain
-rw-r--r--
redirect-http-to-https.gmi
710
log
plain
-rw-r--r--
redis-data.gmi
514
log
plain
-rw-r--r--
refactor-gn-llm-code.gmi
433
log
plain
-rw-r--r--
remove-custom-bootstrap-css.gmi
1029
log
plain
-rw-r--r--
remove-elastic-search.gmi
368
log
plain
-rw-r--r--
remove-external-js-code.gmi
1342
log
plain
-rw-r--r--
remove-extraneous-pcorrs-options.gmi
1329
log
plain
-rw-r--r--
remove-references-to-old-gn-auth-code.gmi
195
log
plain
-rw-r--r--
remove_gn2_gn3_network_dependency.gmi
462
log
plain
-rw-r--r--
render-images-in-tissue-web-output.gmi
384
log
plain
-rw-r--r--
report-invalid-search-queries-over-api.gmi
556
log
plain
-rw-r--r--
reset-password-on-container-rebuild.gmi
259
log
plain
-rw-r--r--
review-auth-code.gmi
257
log
plain
-rw-r--r--
rework-settings.gmi
1089
log
plain
-rw-r--r--
rqtl-mapping-throws-JSONDecodeError.gmi
4672
log
plain
-rw-r--r--
run-correlations-in-external-process.gmi
1424
log
plain
-rw-r--r--
sample-data-caching-problem.gmi
907
log
plain
-rw-r--r--
sample-data-not-appearing-in-phenotype-editing-page.gmi
756
log
plain
-rw-r--r--
search-case-sensitive.gmi
178
log
plain
-rw-r--r--
search-for-brca.gmi
604
log
plain
-rw-r--r--
search-hyphen-issue.gmi
278
log
plain
-rw-r--r--
search-queries-with-quoted-author-names-dont-work.gmi
434
log
plain
-rw-r--r--
search-results-for-SNPs-look-weird.gmi
908
log
plain
-rw-r--r--
search-results-not-quite-as-expected.gmi
2685
log
plain
-rw-r--r--
search-results-presentation-designs.gmi
451
log
plain
-rw-r--r--
send-out-confirmation-emails-on-registration.gmi
499
log
plain
-rw-r--r--
set-up-jwt-gn3.gmi
1143
log
plain
-rw-r--r--
set-up-virtuoso-on-production.gmi
426
log
plain
-rw-r--r--
simplify_data_set_py_in_gn2.gmi
1241
log
plain
-rw-r--r--
slow-correlations.gmi
5275
log
plain
-rw-r--r--
slow-query.gmi
3938
log
plain
-rw-r--r--
slow-sql-query-for-xapian-indexing.gmi
6947
log
plain
-rw-r--r--
sorting-correlation-nan-vals.gmi
485
log
plain
-rw-r--r--
sql-too-many-connections.gmi
976
log
plain
-rw-r--r--
sqlalchemy.gmi
2038
log
plain
-rw-r--r--
strainid-wrong-for-bxd.gmi
2261
log
plain
-rw-r--r--
support-searching-using-snp-names.gmi
688
log
plain
d---------
systems
755
log
plain
-rw-r--r--
temporary-traits-access-concerns.gmi
1120
log
plain
-rw-r--r--
tests-for-genodb.gmi
524
log
plain
-rw-r--r--
timeout-in-cd.gmi
220
log
plain
-rw-r--r--
trait-page-errors-on-cd.gmi
414
log
plain
-rw-r--r--
trait-page-mapping-bug.gmi
1142
log
plain
-rw-r--r--
traits-editing-failure.gmi
400
log
plain
-rw-r--r--
transform-genelist-to-rdf.gmi
2355
log
plain
-rw-r--r--
trouble-shoot-500-on-llm-website.gmi
2310
log
plain
-rw-r--r--
trouble-shoot-inconsistencies-for-gn-llm.gmi
492
log
plain
-rw-r--r--
unable-to-open-new-tabs-for-mapping-correlations-in-chrome.gmi
429
log
plain
-rw-r--r--
uninformative-error-when-batch-submitting-unknown-strains.gmi
568
log
plain
-rw-r--r--
unresponsive-rdf-in-cd.gmi
2871
log
plain
-rw-r--r--
upload-genewiki-rdf-to-cd.gmi
954
log
plain
-rw-r--r--
use-genodb-in-gn.gmi
337
log
plain
-rw-r--r--
variant-browser-using-mm9.gmi
767
log
plain
-rw-r--r--
zero-repr-in-data-upload.gmi
606
log
plain