issues - gn-gemtext - GeneNetwork gemtext knowledge base and issue tracker (mirror right now)

Mode	Name	Size
-rw-r--r--	BXD102xBXD077F1-error.gmi	799	log plain
-rw-r--r--	DOL-mapping.gmi	815	log plain
-rw-r--r--	README.gmi	3511	log plain
-rw-r--r--	TempDataSet-object-has-no-attribute.gmi	2248	log plain
-rw-r--r--	add-collection-import.gmi	367	log plain
-rw-r--r--	add-edit-issue-link-in-tissue.gmi	608	log plain
-rw-r--r--	add-generif-page.gmi	782	log plain
-rw-r--r--	add-homology-track.gmi	1296	log plain
-rw-r--r--	add-mapping-link.gmi	542	log plain
-rw-r--r--	add-metadata-to-traits-page.gmi	4284	log plain
-rw-r--r--	add-mouse-data-from-klaus.gmi	3158	log plain
-rw-r--r--	add-sample-size-to-rdf.gmi	186	log plain
-rw-r--r--	add-search-select-export-to-datatables-table.gmi	1063	log plain
-rw-r--r--	add-search-syntax-hints.gmi	694	log plain
-rw-r--r--	add-target-column-in-pcorrs-table.gmi	992	log plain
-rw-r--r--	adding-principle-component-to-collection-error.gmi	1803	log plain
-rw-r--r--	adding-traits-from-mapping.gmi	243	log plain
-rw-r--r--	annotation.gmi	1601	log plain
d---------	authentication_authorisation	262	log plain
-rw-r--r--	authorisation.gmi	4728	log plain
-rw-r--r--	automated-testing.gmi	5465	log plain
-rw-r--r--	automatically-find-broken-links-on-gn2.gmi	1985	log plain
d---------	binderlite	952	log plain
-rw-r--r--	broken-build-xapian.gmi	263	log plain
-rw-r--r--	broken-cd.gmi	1125	log plain
-rw-r--r--	bugfix_coupling_current_app_and_db_utils.gmi	2351	log plain
-rw-r--r--	buggy-use-of-urljoin.gmi	1498	log plain
-rw-r--r--	cant-use-guix-bioinformatics-with-guix-pull.gmi	393	log plain
-rw-r--r--	capture-data-on-BXDs-in-RDF.gmi	2714	log plain
-rw-r--r--	capture-phenotype-state-in-a-hash.gmi	963	log plain
-rw-r--r--	case-attr-edit-error.gmi	2555	log plain
-rw-r--r--	consecutive-crud-applications-when-uploading-data.gmi	722	log plain
-rw-r--r--	cool-interfaces-we-should-emulate.gmi	1633	log plain
-rw-r--r--	correlation-error.gmi	781	log plain
-rw-r--r--	correlation-missing-file.gmi	1339	log plain
-rw-r--r--	correlation-timing-out.gmi	496	log plain
-rw-r--r--	correlation_speed_issue.gmi	3719	log plain
-rw-r--r--	correlation_wrong_results.gmi	2455	log plain
-rw-r--r--	correlations-all-samples.gmi	944	log plain
-rw-r--r--	correlations-fewer-result-than-expected.gmi	244	log plain
-rw-r--r--	correlations-return-fewer-results.gmi	2842	log plain
-rw-r--r--	correlations-script-to-build-text-files.gmi	1720	log plain
-rw-r--r--	correlations-time-out.gmi	2350	log plain
-rw-r--r--	create-ui-language-for-gn2.gmi	376	log plain
-rw-r--r--	csv-error-ITP_10001-longevity-data-set.gmi	1973	log plain
-rw-r--r--	csv-metadata-not-commented-out.gmi	1196	log plain
-rw-r--r--	custom_data_for_scatterplot.gmi	721	log plain
-rw-r--r--	data-upload.gmi	621	log plain
d---------	data	42	log plain
-rw-r--r--	database-defects.gmi	1973	log plain
-rw-r--r--	database-long-query-after-innodb-migration.gmi	5063	log plain
-rw-r--r--	database-migrations.gmi	513	log plain
-rw-r--r--	database-not-responding.gmi	18862	log plain
-rw-r--r--	dataset_queried_twice.gmi	657	log plain
-rw-r--r--	decouple-tasks-in-results-display.gmi	1552	log plain
-rw-r--r--	default-search-query-in-search-field.gmi	474	log plain
-rw-r--r--	demo-generif-data-in-sparql.gmi	327	log plain
-rw-r--r--	deploy.gmi	1106	log plain
-rw-r--r--	do-bulk-query-for-correlation-results-display.gmi	726	log plain
-rw-r--r--	do-not-conflict-with-random.gmi	783	log plain
-rw-r--r--	document-all-virtuoso-instances.gmi	293	log plain
-rw-r--r--	document-xapian-search-code-architecture.gmi	279	log plain
-rw-r--r--	dump-genewiki-data-in-rdf.gmi	582	log plain
-rw-r--r--	dump-genewiki-metadata.gmi	2262	log plain
-rw-r--r--	dump-sample-data-to-lmdb.gmi	2865	log plain
-rw-r--r--	edit-metadata-bugs.gmi	5257	log plain
-rw-r--r--	effect-size-for-gemma-is-a-must.gmi	720	log plain
-rw-r--r--	enable-intergroup-analysis.gmi	1138	log plain
-rw-r--r--	enter-key-in-global-search-field.gmi	754	log plain
-rw-r--r--	error-when-fetching-snps.gmi	3131	log plain
-rw-r--r--	error-zooming-chromosome.gmi	1810	log plain
-rw-r--r--	failing-menu-in-cd.gmi	402	log plain
-rw-r--r--	failing-tests-on-gn2-20220803.gmi	1126	log plain
d---------	features	46	log plain
-rw-r--r--	fetch-sample-data.gmi	2915	log plain
-rw-r--r--	fetch-trait-names-for-phenotypes.gmi	1180	log plain
-rw-r--r--	fix-broken-builds-in-gn2-and-gn3.gmi	3722	log plain
-rw-r--r--	fix-broken-utf8-chars.gmi	1310	log plain
-rw-r--r--	fix-case-attribute-editing.gmi	1180	log plain
-rw-r--r--	fix-case-attribute-work.gmi	908	log plain
-rw-r--r--	fix-collection-export.gmi	1041	log plain
-rw-r--r--	fix-correlation-table.gmi	758	log plain
-rw-r--r--	fix-haplotype-name-overflow.gmi	398	log plain
-rw-r--r--	fix-include-f1-parents-correlations.gmi	317	log plain
-rw-r--r--	fix-load-rdf-script.gmi	1281	log plain
-rw-r--r--	fix-missing-genotype-files-for-gemma.gmi	697	log plain
-rw-r--r--	fix-scree-plot.gmi	646	log plain
-rw-r--r--	full-text-search.gmi	1307	log plain
d---------	gemma	448	log plain
-rw-r--r--	genecup-running-as-root.gmi	1841	log plain
d---------	genenetwork	509	log plain
d---------	genenetwork1	499	log plain
-rw-r--r--	genenetwork2-cd-sometimes-fails-to-restart.gmi	1025	log plain
-rw-r--r--	generalize-tables.gmi	1208	log plain
-rw-r--r--	geno-correlation-bug.gmi	867	log plain
-rw-r--r--	genotype-metadata.gmi	264	log plain
-rw-r--r--	global-search-connection-slow.gmi	774	log plain
-rw-r--r--	global-search-results.gmi	771	log plain
-rw-r--r--	global_search_phenotypes.gmi	398	log plain
-rw-r--r--	gn1-annotation-page-is-broken.gmi	439	log plain
-rw-r--r--	gn3-technical-debt.gmi	429	log plain
d---------	gnbug	328	log plain
-rw-r--r--	implement-parallel-correlation-with-rust.gmi	2007	log plain
-rw-r--r--	improve-menu-generation-and-move-it-to-gn3.gmi	1850	log plain
-rw-r--r--	improve-presentation-of-search-results.gmi	915	log plain
-rw-r--r--	integrate-feed-analyser.gmi	520	log plain
-rw-r--r--	make-partial-correlation-tables-searchable.gmi	875	log plain
-rw-r--r--	mapping-haley-knott-regression-chromosome-zoom-in-bug.gmi	631	log plain
-rw-r--r--	mapping-horizontal-scroll.gmi	335	log plain
-rw-r--r--	mapping-zoom-bug.gmi	1005	log plain
-rw-r--r--	materialised-views-for-correlations.gmi	3955	log plain
-rw-r--r--	metadata-caching-bug.gmi	2816	log plain
-rw-r--r--	metadata-edits-improvements.gmi	5936	log plain
-rw-r--r--	misc-ui-fixes.gmi	1608	log plain
-rw-r--r--	missing-ci-cd-definitions-for-service-daemons.gmi	1290	log plain
-rw-r--r--	missing-python-modules-for-gn3.gmi	329	log plain
-rw-r--r--	model-gn-menu-in-rdf.gmi	289	log plain
-rw-r--r--	multi-trait-heatmap-failed.gmi	802	log plain
-rw-r--r--	notify-user-after-trait-edit.gmi	1047	log plain
-rw-r--r--	order-entries-in-csv-dump.gmi	237	log plain
-rw-r--r--	pca-changes.gmi	597	log plain
-rw-r--r--	per-service-profile-for-shepherd-services.gmi	1510	log plain
-rw-r--r--	phenotype-correlation-error.gmi	9950	log plain
-rw-r--r--	pre-cache-datasets.gmi	917	log plain
-rw-r--r--	public-inbox.gmi	298	log plain
d---------	quality-control	390	log plain
-rw-r--r--	redirect-http-to-https.gmi	710	log plain
-rw-r--r--	redis-data.gmi	514	log plain
-rw-r--r--	remove-elastic-search.gmi	368	log plain
-rw-r--r--	remove-external-js-code.gmi	1061	log plain
-rw-r--r--	remove-extraneous-pcorrs-options.gmi	1329	log plain
-rw-r--r--	remove_gn2_gn3_network_dependency.gmi	462	log plain
-rw-r--r--	render-images-in-tissue-web-output.gmi	384	log plain
-rw-r--r--	report-invalid-search-queries-over-api.gmi	556	log plain
-rw-r--r--	resurrect-mechanical-rob.gmi	819	log plain
-rw-r--r--	review-auth-code.gmi	247	log plain
-rw-r--r--	rework-settings.gmi	1080	log plain
-rw-r--r--	rqtl-mapping-throws-JSONDecodeError.gmi	4672	log plain
-rw-r--r--	run-correlations-in-external-process.gmi	1424	log plain
-rw-r--r--	sample-data-caching-problem.gmi	907	log plain
-rw-r--r--	search-for-brca.gmi	604	log plain
-rw-r--r--	search-hyphen-issue.gmi	278	log plain
-rw-r--r--	search-queries-with-quoted-author-names-dont-work.gmi	434	log plain
-rw-r--r--	search-results-for-SNPs-look-weird.gmi	908	log plain
-rw-r--r--	search-results-not-quite-as-expected.gmi	2685	log plain
-rw-r--r--	search-results-presentation-designs.gmi	451	log plain
-rw-r--r--	simplify_data_set_py_in_gn2.gmi	1241	log plain
-rw-r--r--	slow-correlations.gmi	5275	log plain
-rw-r--r--	slow-query.gmi	3938	log plain
-rw-r--r--	sorting-correlation-nan-vals.gmi	485	log plain
-rw-r--r--	sql-too-many-connections.gmi	976	log plain
-rw-r--r--	sqlalchemy.gmi	2038	log plain
-rw-r--r--	support-searching-using-snp-names.gmi	688	log plain
d---------	systems	659	log plain
-rw-r--r--	tests-for-genodb.gmi	524	log plain
-rw-r--r--	timeout-in-cd.gmi	220	log plain
-rw-r--r--	trait-page-errors-on-cd.gmi	401	log plain
-rw-r--r--	trait-page-mapping-bug.gmi	1142	log plain
-rw-r--r--	traits-editing-failure.gmi	400	log plain
-rw-r--r--	unable-to-open-new-tabs-for-mapping-correlations-in-chrome.gmi	429	log plain
-rw-r--r--	uninformative-error-when-batch-submitting-unknown-strains.gmi	568	log plain
-rw-r--r--	upload-genewiki-rdf-to-cd.gmi	954	log plain
-rw-r--r--	use-genodb-in-gn.gmi	337	log plain
-rw-r--r--	variant-browser-using-mm9.gmi	767	log plain
-rw-r--r--	zero-repr-in-data-upload.gmi	606	log plain