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# GN3 Setup on tux01 - Non-Deterministic Behavior
## Tags
* assigned: bonfacem, zachs
* priority: high
* type: ops, guix
* keywords: gn3
* status: closed
## Description
Zach and Munyoki attempted to set up GN3 on tux01 following the provided channels file:
```
(list (channel
(name 'gn-bioinformatics)
(url "https://git.genenetwork.org/guix-bioinformatics")
(branch "master")
(commit
"25cb9ad70155a08c088ff28bf54c06e12293105b"))
(channel
(name 'guix-forge)
(url "https://git.systemreboot.net/guix-forge/")
(branch "main")
(introduction
(make-channel-introduction
"0432e37b20dd678a02efee21adf0b9525a670310"
(openpgp-fingerprint
"7F73 0343 F2F0 9F3C 77BF 79D3 2E25 EE8B 6180 2BB3")))))
```
... and execution steps:
```
source /var/guix/profiles/per-user/aruni/current-guix/etc/profile
guix pull -C channels.scm -p ~/.guix-extra-profiles/genenetwork
. .guix-extra-profiles/genenetwork/etc/profile
guix install genenetwork3 genenetwork2 -p ~/.guix-extra-profiles/genenetwork
git clone https://github.com/genenetwork/genenetwork3.git
cd genenetwork3/
/export2/local/home/zas1024/gn3-zach/genenetwork3/run_dev.sh run --port=8090
```
Despite our efforts, attempting a CURL on GN3 using Zach's username consistently resulted in an empty response.
Even when Zach switched to my user (bonfacem) and repeated the steps with my ".guix-extra-profile", the CURL still produced an empty result. We tried various troubleshooting steps, such as running the commands in a shell with no specific environment set up and using su to switch to bonfacem from Zach's userspace, but the issue persists.
## Resolution
The error caused was due to missing SSL certificates. This was resolved by exporting the right SSL paths before starting the server. The simple fix was adding:
```
export SSL_CERT_DIR="$GUIX_PROFILE/etc/ssl/certs"
export SSL_CERT_FILE="$GUIX_PROFILE/etc/ssl/certs/ca-certificates.crt"
export GIT_SSL_CAINFO="$SSL_CERT_FILE"
```
Also, debugging was difficult because of poor logging. This is being tracked here:
=> issues/add-logging-to-rdf-endpoints.gmi
* closed
|
