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# Implementing parallel correlation with rust
### Notes
In an attempt to speed the current gn2 correlation
we are doing an reimplentation in rust to support
parralel computation
## Tags
* assigned:alexm
* type: upgrade
* priority: medium
* status: in progress
* keywords: correlation,rust,parralel
## Tasks
* [X] implementation of basic pearson and spearman correlation in rust
* [X] add unittests and benchmarks
* [X] loading datasets;format
* [X] package the library as a guix package
* [x] gn2 integration
* [x] parsing input datasets
* [x] benchmark for all datasets rust v gn2 version
* [ ] Figure out how to tell cargo to use the declared dependencies, rather than dowloading the dependencies
* [ ] db queries migration to gn3 or use partial correlation queries
* [ ] add parralel computation
* [ ] code optimization and minor fixes
## Notes
You can call the lib as an external process from any language or directly call
it in a rust cargo
code can be found here:
=> https://github.com/Alexanderlacuna/correlation_rust.git
added a documentation for correlation rust
=> https://github.com/Alexanderlacuna/correlation_rust/blob/main/README.md
PR for integrating to genenetwork:
=> https://github.com/genenetwork/genenetwork3/pull/93
### 8 ,July 2022
worked on input data parsing and enhancements
PR for parsing datasets
=> https://github.com/genenetwork/genenetwork3/pull/96
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