1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
|
# GeneNetwork2: Account Registration Error
## Tags
* type: bug
* priority: critical
* assigned: zachs, zsloan, fredm
* status: open
* keywords: genenetwork2, account management, user, registration
## Description
When one attempts to register a new user account on
=> https://genenetwork.org the production server
the following error is raised:
```
GeneNetwork 2.11-rc2 http://genenetwork.org/oauth2/user/register (11:12AM UTC Mar 19, 2024)
Traceback (most recent call last):
File "/home/zas1024/opt/gn-latest-20240112/lib/python3.10/site-packages/requests/models.py", line 971, in json
return complexjson.loads(self.text, **kwargs)
File "/home/zas1024/opt/gn-latest-20240112/lib/python3.10/site-packages/simplejson/__init__.py", line 525, in loads
return _default_decoder.decode(s)
File "/home/zas1024/opt/gn-latest-20240112/lib/python3.10/site-packages/simplejson/decoder.py", line 370, in decode
obj, end = self.raw_decode(s)
File "/home/zas1024/opt/gn-latest-20240112/lib/python3.10/site-packages/simplejson/decoder.py", line 400, in raw_decode
return self.scan_once(s, idx=_w(s, idx).end())
simplejson.errors.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/zas1024/opt/gn-latest-20240112/lib/python3.10/site-packages/flask/app.py", line 1523, in full_dispatch_request
rv = self.dispatch_request()
File "/home/zas1024/opt/gn-latest-20240112/lib/python3.10/site-packages/flask/app.py", line 1509, in dispatch_request
return self.ensure_sync(self.view_functions[rule.endpoint])(**req.view_args)
File "/home/gn2/production/gene/gn2/wqflask/oauth2/users.py", line 146, in register_user
results = response.json()
File "/home/zas1024/opt/gn-latest-20240112/lib/python3.10/site-packages/requests/models.py", line 975, in json
raise RequestsJSONDecodeError(e.msg, e.doc, e.pos)
requests.exceptions.JSONDecodeError: Expecting value: line 1 column 1 (char 0)
```
This error does not show up on the following systems:
=> https://cd.genenetwork.org/ CD Test Server
=> https://test1.genenetwork.org/ Arun's Production Facsimile Server
It does, however, show up on
=> https://staging.genenetwork.org/ GeneNetwork Staging server with Uploader
The logs indicate:
```
2024-03-19 11:31:04 File "/gnu/store/2qhgkf5j649kv57nw4lzsbwlnb1790vq-profile/lib/python3.10/site-packages/gn2/wsgi.py", line 1, in <module>
2024-03-19 11:31:04 from gn2.run_gunicorn import app as application # expect application as a name
2024-03-19 11:31:04 File "/gnu/store/2qhgkf5j649kv57nw4lzsbwlnb1790vq-profile/lib/python3.10/site-packages/gn2/run_gunicorn.py", line 12, in <module
>
2024-03-19 11:31:04 from gn2.gn2_main import app
2024-03-19 11:31:04 File "/gnu/store/2qhgkf5j649kv57nw4lzsbwlnb1790vq-profile/lib/python3.10/site-packages/gn2/gn2_main.py", line 3, in <module>
2024-03-19 11:31:04 from gn2.wqflask import app
2024-03-19 11:31:04 File "/gnu/store/2qhgkf5j649kv57nw4lzsbwlnb1790vq-profile/lib/python3.10/site-packages/gn2/wqflask/__init__.py", line 21, in <mo
dule>
2024-03-19 11:31:04 from gn2.wqflask.group_manager import group_management
2024-03-19 11:31:04 File "/gnu/store/2qhgkf5j649kv57nw4lzsbwlnb1790vq-profile/lib/python3.10/site-packages/gn2/wqflask/group_manager.py", line 15, i
n <module>
2024-03-19 11:31:04 from gn2.wqflask.decorators import login_required
2024-03-19 11:31:04 File "/gnu/store/2qhgkf5j649kv57nw4lzsbwlnb1790vq-profile/lib/python3.10/site-packages/gn2/wqflask/decorators.py", line 14, in <
module>
2024-03-19 11:31:04 from gn2.wqflask.oauth2 import client
2024-03-19 11:31:04 File "/gnu/store/2qhgkf5j649kv57nw4lzsbwlnb1790vq-profile/lib/python3.10/site-packages/gn2/wqflask/oauth2/client.py", line 14, i
n <module>
2024-03-19 11:31:04 from gn2.wqflask.oauth2.checks import user_logged_in
2024-03-19 11:31:04 File "/gnu/store/2qhgkf5j649kv57nw4lzsbwlnb1790vq-profile/lib/python3.10/site-packages/gn2/wqflask/oauth2/checks.py", line 10, i
n <module>
2024-03-19 11:31:04 from .client import authserver_uri, oauth2_clientid, oauth2_clientsecret
2024-03-19 11:31:04 ImportError: cannot import name 'authserver_uri' from partially initialized module 'gn2.wqflask.oauth2.client' (most likely due to
a circular import) (/gnu/store/2qhgkf5j649kv57nw4lzsbwlnb1790vq-profile/lib/python3.10/site-packages/gn2/wqflask/oauth2/client.py)
```
which is weird since
=> https://github.com/genenetwork/genenetwork2/commit/b14fefe25f1536e2376efa6b0dba9dce33609725 this commit fixes the circular import issue.
The following two commits are somewhat related to that above:
=> https://github.com/genenetwork/genenetwork2/commit/b63b91cf52c148c6f7091e3845bb3fdb11052d62
=> https://github.com/genenetwork/genenetwork2/commit/ec480af2769fd17acac95dc4473ca4128a46279b
|
