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# GN1 Pairscan
Pair scan is not working because of an import issue.
```
Here is the error I get trying to run pair-scan.
Traceback (most recent call last):
File "/gnshare/gn/web/webqtl/cmdLine/webqtlCmdLine.py", line 79, in ?
from pairScan import DirectPlotPage
File "/gnshare/gn/web/webqtl/cmdLine/../pairScan/DirectPlotPage.py", line 32,
in ?
import direct
ImportError: No module named direct
```
# Tags
* critical bug
* assigned: pjotrp
# Notes
Efraim included the module and wrote
```
from the traceback it looks like it's in production.
from my gn1-python24-site-packages folder from lily there's a direct.so{,.bak} file so I'll start hunting around to see what I can make of it.
```
and a fix in guix-bioinformatics:
```
gn: Add python24-direct
```
it is not on Tux01, so let's update from
```
guix-past 4f5856f85578a04991dc646a06279d51f85973bf
guix-bioinformatics b08410a9944e677ef71267410b235ba869f3935f
```
and
```
gn1@tux01:~$ ~/opt/guix/bin/guix --version
guix (GNU Guix) 1.2.0-12.dffc918
```
First update guix with
```
gn1@tux01:~$ ~/opt/guix/bin/guix pull -p ~/opt/guix-latest
```
Which got me the error Unbound variable: license:bsd-0.
followed by the git repos above.
The error changed into
```
Traceback (most recent call last):
File "/gnshare/gn/web/webqtl/cmdLine/webqtlCmdLine.py", line 81, in ?
page = DirectPlotPage.DirectPlotPage(fd)
File "/gnshare/gn/web/webqtl/cmdLine/../pairScan/DirectPlotPage.py", line 141, in __init__
ResultFull, ResultInteract, ResultAdd = direct.permu(webqtlConfig.GENODIR, _vals, _strains, genofile + ".geno", 500) #XZ, 08/14/2008: add module name webqtlConfig
AttributeError: 'module' object has no attribute 'permu'
```
|
