From b4bede9a424de85b6f0b3f9232486172e5baf96e Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Wed, 21 Jun 2023 10:09:49 +0200 Subject: GNSoC info page --- topics/biohackathon/GNGSoC2023.gmi | 65 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 65 insertions(+) create mode 100644 topics/biohackathon/GNGSoC2023.gmi (limited to 'topics') diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi new file mode 100644 index 0000000..bf0bfb6 --- /dev/null +++ b/topics/biohackathon/GNGSoC2023.gmi @@ -0,0 +1,65 @@ +# GNGSoC 2023 + +GN Summer of Code + +## Introduction + +We are running a GN Summer of Code in small teams. + +* Runs July + August 2023 +* Weekly plenary where projects present progress - Thursday 9am EU, 10 am EAT. +* Projects should be (slightly) out of comfort zone +* Use gemtext documentation +* Option for publishing on progress by then end as a BLOG or BioHackrXiv + +## CI for guix-bioinformatics (guix pull) + +* lead: Arun +* team: Efraim, Pjotr, Sarthak + +Making GN deployment rock solid + +git repo genenetwork-machines, guix-bioinformatics + +## Nextgen databases + +lmdb+RDF + +* lead: Bonface +* team: Fred, Alex +* contact: Pjotr + +git repo genenetwork3 + +## LLMs & metadata (RDF) + +* lead: Shelby +* team: Priscilla +* contact: Bonface + +## API to access data from GN + +* lead: Rupert +* team: Flavia +* contacts: Bonface, Zach, Fred + +Documentation and adding endpoints + +git repo gn-docs & genenetwork3 & SPARQL + +=> https://github.com/genenetwork/gn-docs + +## Editing data + +* lead: Fred +* team: Arthur, Rupert, Zach +* contacts: Rob + +## Links + +* Matrix room is GNSoC2023 + +=> https://fosdem.org/2023/schedule/event/tissue/ Arun's talk on our issue tracker +=> https://github.com/genenetwork/gn-gemtext-threads Git repo on issues/tasks/topics + +For more info contact pjotr.public912 at thebird.nl -- cgit v1.2.3