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AgeCommit message (Expand)Author
2021-10-09machinesPjotr Prins
2021-10-07Tux02 is going to run productionPjotr Prins
2021-10-07GN1 time machinesPjotr Prins
2021-10-06sheepdog: update tasksPjotr Prins
2021-10-06Sheepdog and machine roomPjotr Prins
2021-10-06sheepdogPjotr Prins
2021-10-06backupsPjotr Prins
2021-10-04Add topic on reproducibilityjgart
2021-10-01Pjotr notesPjotr Prins
2021-10-01New Issue: Non-Clustered and Flippable Heatmaps...* Add new "issue" to track the migration of heatmaps without the dendrograms and also allow the flipping of the heatmap from horizontal to vertical orientations and vice-versa. Frederick Muriuki Muriithi
2021-10-01Adds guix container topic to notebooksjgart
2021-10-01Add jupyter cli options link to our notes on jupyterjgart
2021-09-29backupsPjotr Prins
2021-09-24Add tasksPjotr Prins
2021-09-24Reinstate backups to epysodePjotr Prins
2021-09-22Add binderlite static assets issue to issues directoryjgart
2021-09-20Add tags section...* Add a tags section to track things like "assigned to" etc. Frederick Muriuki Muriithi
2021-09-20More details regarding error contextjgart
2021-09-20Add error regarding static assets after forwarding binderlite with nginxjgart
2021-09-20Adds nginx question regarding $rest arg...https://git.genenetwork.org/jgart/binderlite/src/branch/master/nginx.conf#L36 jgart
2021-09-20Add binderlite port map that I'm currently usingjgart
2021-09-20Adds feature request idea for GeneNetwork CLI...closes https://github.com/genenetwork/genenetwork3/issues/39 jgart
2021-09-17Added issue on BNW not responding.Pjotr Prins
2021-09-16Add topic for authentication workBonfaceKilz
2021-09-15tasksPjotr Prins
2021-09-15Remove kanban symlinks and add tagPjotr Prins
2021-09-13Adds --ad-hoc to guix environment command...Python dependencies are not available unless I use --ad-hoc or -m jgart
2021-09-10Comments on JupyterPjotr Prins
2021-09-10kill-jupyter permissions on penguin2...I want to run the following on penguin2: ps aux | grep jupyter | awk '{ print $2 }' | xargs kill -9 jgart
2021-09-09Add current user-stories for binderlite...* Next Steps ** Optimizations *** Uniquely identify last built notebook *** Shutdown notebook and save to memory *** Shutdown kernels gracefully *** guix-kernel (AKA guix-jupyter) runs by default in a container jgart
2021-09-09Update issue with progressMuriithi Frederick Muriuki
2021-09-09Merge branch 'main' of github.com:genenetwork/gn-gemtext-threadsMuriithi Frederick Muriuki
2021-09-09Update status of implementation efforts...* topics/gn1-migration-to-gn2/clustering.gmi: update status * topics/gn1-migration-to-gn2/sample_clustering_heatmap.png: add missing sample heatmap image Muriithi Frederick Muriuki
2021-09-08Add extra topic on adding delete button for datasetsBonfaceKilz
2021-09-01JupyterPjotr Prins
2021-08-31Add websocketd as a possible alternative to xtermjs...Turn any program that uses STDIN/STDOUT into a WebSocket server. Like inetd, but for WebSockets. jgart
2021-08-31virtuoso: remove password to avoid confusionPjotr Prins
2021-08-31pluto service and working on fallbacksPjotr Prins
2021-08-31Update with progress...* Update issue with progress on genotype files Muriithi Frederick Muriuki
2021-08-30Update with progress and notes...* Update issue with notes on traits file and strains in genotype file * Add notes on required TODOs Muriithi Frederick Muriuki
2021-08-30Update issue with progress and notes...* Add notes on progress * Add notes on the genotype files, that is still not quite clear, to help with tracing the flow of information Muriithi Frederick Muriuki
2021-08-27Instructions for virtuosoPjotr Prins
2021-08-26Merge branch 'main' of github.com:genenetwork/gn-gemtext-threadsMuriithi Frederick Muriuki
2021-08-26Update issue with findings on rust-qtlreaper...* The usage of ~rust-qtlreaper~ in GN2 is not quite clear. This commit details the findings of the search for the usage of ~rust-qtlreaper~ in GN2 and the attempts to replicate in GN3. Muriithi Frederick Muriuki
2021-08-22Adds TODO item (unit tests)jgart
2021-08-22Adds TODO itemjgart
2021-08-22Add current TODOsjgart
2021-08-22Adds basic working demojgart
2021-08-20Update with progress...* Note use of QTLReaper * Update with notes on newly migrated portions of code Muriithi Frederick Muriuki
2021-08-20Update issue with write-up on heatmap image generation...* Work through the migrated code, and the old GN1 code and write-up a flow of the data, to assist in figuring out the differences in the data. The write-up helped realise that the code migrated so far only helps with the "distance" lines, and there is still need to figure out, and compute or lay out the data needed for the actual heatmap generation. Muriithi Frederick Muriuki