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2022-09-03orchestration: adding servicesPjotr Prins
2022-09-02Collapsed P2 resolvingPjotr Prins
2022-08-31Remove note about vpn-slice packaging status.Arun Isaac
2022-08-29Update topic on better logging.Munyoki Kilyungi
* topics/better-logging.gmi: Update design-doc.
2022-08-25Collect coding standards documents.Arun Isaac
2022-08-25Use exceptions to indicate errors.Arun Isaac
2022-08-25Document qtwebengine workaround for openconnect-sso.Arun Isaac
2022-08-25Add note about vpn-slice packaging status in Guix.Arun Isaac
2022-08-25Add note about sudo use with openconnect-sso.Arun Isaac
2022-08-25Remove --user argument from openconnect-sso invocation.Arun Isaac
2022-08-23Update better-logging topicMunyoki Kilyungi
2022-08-23Fix sub-lists in "better-logging"Munyoki Kilyungi
2022-08-23Add a design-doc for better loggingMunyoki Kilyungi
2022-08-23Capitalize authgroup openconnect-sso argument.Arun Isaac
2022-08-22Document connecting to UTHSC VPN.Arun Isaac
2022-08-22Add some emphasisFrederick Muriuki Muriithi
2022-08-22Add notes on connecting via TCP ports, rather than Unix SocketsFrederick Muriuki Muriithi
2022-08-22Use ${HOME} for documentation.Frederick Muriuki Muriithi
2022-08-19Documentation: Setup small databaseFrederick Muriuki Muriithi
2022-08-19Documentation: Setup new user, and their default database.Frederick Muriuki Muriithi
2022-08-19Documentation: Setting up local mariadb server for development.Frederick Muriuki Muriithi
2022-08-17Use pre-formatted text blocks for source codeFrederick Muriuki Muriithi
2022-08-17Topic: Queries (On preventing SQL Injection).Frederick Muriuki Muriithi
2022-08-17Installing GN2 on a new machinePjotr Prins
2022-07-19Rescue quality control issues from topics.Arun Isaac
2022-07-19Rescue testing issue from topics.Arun Isaac
2022-07-18Add 'Annotations' sectionFrederick Muriuki Muriithi
2022-07-18Add section on Platforms, Groups, Studies and Datasets.Frederick Muriuki Muriithi
2022-07-06Document how to update penguin2 mariadb to the production database.Arun Isaac
* topics/systems/mariadb/mariadb.gmi (Update MariaDB on penguin2 to the latest production database): New section.
2022-07-05Describe how to extract TS data from a provided datasetBonfaceKilz
* topics/data-uploads/datasets.gmi: New file.
2022-07-01Rescue issues lost in the topics/systems/mariadb directory.Arun Isaac
2022-07-01Move issues lost inside the topics directory.Arun Isaac
2022-06-24virtuoso: Document first time upload failure with large files.Arun Isaac
* topics/systems/virtuoso.gmi (Loading data into virtuoso): Document first time upload failure with large files.
2022-06-22genotype-database: Fold long code lines.Arun Isaac
* topics/genotype-database.gmi (Database Layout): Fold long code lines.
2022-06-22genotype-database: Use '*' as list bullets.Arun Isaac
* topics/genotype-database.gmi [Database layout]: Use '*' as list bullets instead of '-'.
2022-06-21genotype-database: Document design and database layout.Arun Isaac
* topics/genotype-database.gmi (Database layout): New section.
2022-06-21genotype-database: Document reading the entire matrix.Arun Isaac
* topics/genotype-database.gmi: Document reading the entire matrix using the genodb.nparray function.
2022-06-15virtuoso: Document hack to get PID of container shepherd.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Document hack to get PID of container shepherd.
2022-06-15virtuoso: Use /run/current-system/... path to bash in container.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Use /run/current-system/... path to bash in container.
2022-06-15virtuoso: Enter all namespaces with `nsenter -a'.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Enter all namespaces with `nsenter -a'.
2022-06-14topics: virtuoso: Fix wrong grammarBonfaceKilz
2022-06-14topics: virtuoso: Note that conductor interface isn't supportedBonfaceKilz
2022-06-14topics: virtuoso: Note that "/dev/sdX" is non-consequentialBonfaceKilz
2022-06-14topics: virtuoso: Add extra docs on how to run sparql using web UIBonfaceKilz
* topics/systems/virtuoso.gmi (Running SPARQL Queries using isql): Add more detailed section of how to access SPARQL using both the web interface and sqli.
2022-06-14topics: virtuoso: Document how to inspect a system-containerBonfaceKilz
* topics/systems/virtuoso.gmi (Running virtuoso in a guix system container): Demonstrate, using `nsenter`, how one would inspect a system container.
2022-06-14topics: virtuoso: Document how to run sparql queries using isqlBonfaceKilz
* topics/systems/virtuoso.gmi (Running Queries using isql): Document how to use isql to run sparql queries using a guix shell.
2022-06-14virtuoso: Remove unnecessary root file system definition.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso): Remove unnecessary root file system definition.
2022-06-14guix-profiles: Use public path to guix-bioinformatics channel.Arun Isaac
An "Arun-specific path" was accidentally added in an earlier commit.
2022-06-14topics: Explain use of Guix profiles for development.Arun Isaac
* topics/guix-profiles.gmi: New file.
2022-06-09topics: genotype-database: Use new functional interface.Arun Isaac
* topics/genotype-database.gmi: Use new functional interface.
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