summaryrefslogtreecommitdiff
path: root/topics
AgeCommit message (Expand)Author
2022-06-24virtuoso: Document first time upload failure with large files....* topics/systems/virtuoso.gmi (Loading data into virtuoso): Document first time upload failure with large files. Arun Isaac
2022-06-22genotype-database: Fold long code lines....* topics/genotype-database.gmi (Database Layout): Fold long code lines. Arun Isaac
2022-06-22genotype-database: Use '*' as list bullets....* topics/genotype-database.gmi [Database layout]: Use '*' as list bullets instead of '-'. Arun Isaac
2022-06-21genotype-database: Document design and database layout....* topics/genotype-database.gmi (Database layout): New section. Arun Isaac
2022-06-21genotype-database: Document reading the entire matrix....* topics/genotype-database.gmi: Document reading the entire matrix using the genodb.nparray function. Arun Isaac
2022-06-15virtuoso: Document hack to get PID of container shepherd....* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Document hack to get PID of container shepherd. Arun Isaac
2022-06-15virtuoso: Use /run/current-system/... path to bash in container....* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Use /run/current-system/... path to bash in container. Arun Isaac
2022-06-15virtuoso: Enter all namespaces with `nsenter -a'....* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Enter all namespaces with `nsenter -a'. Arun Isaac
2022-06-14topics: virtuoso: Fix wrong grammarBonfaceKilz
2022-06-14topics: virtuoso: Note that conductor interface isn't supportedBonfaceKilz
2022-06-14topics: virtuoso: Note that "/dev/sdX" is non-consequentialBonfaceKilz
2022-06-14topics: virtuoso: Add extra docs on how to run sparql using web UI...* topics/systems/virtuoso.gmi (Running SPARQL Queries using isql): Add more detailed section of how to access SPARQL using both the web interface and sqli. BonfaceKilz
2022-06-14topics: virtuoso: Document how to inspect a system-container...* topics/systems/virtuoso.gmi (Running virtuoso in a guix system container): Demonstrate, using `nsenter`, how one would inspect a system container. BonfaceKilz
2022-06-14topics: virtuoso: Document how to run sparql queries using isql...* topics/systems/virtuoso.gmi (Running Queries using isql): Document how to use isql to run sparql queries using a guix shell. BonfaceKilz
2022-06-14virtuoso: Remove unnecessary root file system definition....* topics/systems/virtuoso.gmi (Running virtuoso): Remove unnecessary root file system definition. Arun Isaac
2022-06-14guix-profiles: Use public path to guix-bioinformatics channel....An "Arun-specific path" was accidentally added in an earlier commit. Arun Isaac
2022-06-14topics: Explain use of Guix profiles for development....* topics/guix-profiles.gmi: New file. Arun Isaac
2022-06-09topics: genotype-database: Use new functional interface....* topics/genotype-database.gmi: Use new functional interface. Arun Isaac
2022-06-08topics: genotype-database: Document reading columns....* topics/genotype-database.gmi: Document reading columns in Python. Arun Isaac
2022-06-07topics: virtuoso: Fix misspelling of "Protocol"....* topics/systems/virtuoso.gmi (Loading data into virtuoso): Fix misspelling of "Protocol" changing "Protocal" to "Protocol". Arun Isaac
2022-06-03topics: Document genotype databases....* topics/genotype-database.gmi: New file. Arun Isaac
2022-05-26Move post on debugging with pudb into it's TopicsBonfaceKilz
2022-05-16New Issue: Remove extra pcorrs optionsFrederick Muriuki Muriithi
2022-05-06Added link; minor text editsPjotr Prins
2022-05-06List developer links....* topics/links.gmi: New file. * index.skb: Link to it. Arun Isaac
2022-05-05topics: Move virtuoso passwords documentation....* topics/systems/virtuoso.gmi (Virtuoso users and setting their passwords): Rename to ... (Set passwords for virtuoso users): ... this, and move to after "Running virtuoso". Arun Isaac
2022-05-05topics: Simplify virtuoso introduction....* topics/systems/virtuoso.gmi: Simplify introduction. Arun Isaac
2022-05-05topics: Document minimal virtuoso configuration....* topics/systems/virtuoso.gmi (Running virtuoso): Document manually running virtuoso on the command-line with a minimal configuration. (Virtuoso.ini): Delete section. Arun Isaac
2022-05-05topics: Document RDF validation, virtuoso graph loading and deletion....* topics/systems/virtuoso.gmi (Loading data into virtuoso): Document RDF validation, virtuoso graph loading and deletion. Arun Isaac
2022-04-29topics: Fix graph name in virtuoso upload....* topics/systems/virtuoso.gmi (SPARQL 1.1 Graph Store HTTP Protocol): Fix graph name. Arun Isaac
2022-04-29topics: Document loading data into virtuoso....* topics/systems/virtuoso.gmi (Loading data into virtuoso): Organize into new section. Arun Isaac
2022-04-29topics: Group running virtuoso into section....* topics/systems/virtuoso.gmi (Running virtuoso): Group running virtuoso into section. Arun Isaac
2022-04-29topics: Remove blank lines in virtuoso topic....* topics/systems/virtuoso.gmi: Remove unnecessary blank lines. Arun Isaac
2022-04-29topics: Switch to guix shell in virtuoso topic....* topics/systems/virtuoso.gmi: Switch from guix environment to guix shell. Arun Isaac
2022-04-29topics: Document virtuoso user configuration....* topics/systems/virtuoso.gmi (Virtuoso users and setting their passwords): New section. Arun Isaac
2022-04-29topics: Retitle and detag virtuoso topic....* topics/systems/virtuoso.gmi: Set title to "Virtuoso". Remove tags. Arun Isaac
2022-04-20topics: Document running virtuoso in a Guix container....* topics/systems/virtuoso.gmi (Running virtuoso in a guix system container): New subsubsection. Arun Isaac
2022-04-08riscv: Post on building Guix packages for RISC-V....* topics/riscv/building-guix-packages-for-riscv.gmi: New file. Arun Isaac
2022-04-04Update on documentation progressFrederick Muriuki Muriithi
2022-03-30Rename inserting_traits.gmi to inserting-traits.gmi...Didn't notice that the file-names used hyphens instead of underscoreszsloan
2022-03-30Create inserting_traits.gmizsloan
2022-03-28List top 10 tests with notes from RobBonfaceKilz
2022-03-28Add notes on traits to the gn-hacking-documentation issueFrederick Muriuki Muriithi
2022-03-22Close `Migrate GN1 Clustering` issueFrederick Muriuki Muriithi
2022-03-22Add notes from email correspondence on testing GN2Frederick Muriuki Muriithi
2022-03-16Tag and Prioritise more issuesFrederick Muriuki Muriithi
2022-03-14Break out file into 2 separate issuesFrederick Muriuki Muriithi
2022-03-14Tag and prioritise a bunch of issuesFrederick Muriuki Muriithi
2022-03-11Add 'Hacking Documentation' Issue...To help with understanding the system and its implementation, for both new and experienced contributors, this commit introduces a document to track some of the undocumented things about the system. Frederick Muriuki Muriithi
2022-03-05bbb: update headerjgart