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2022-06-15virtuoso: Document hack to get PID of container shepherd.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Document hack to get PID of container shepherd.
2022-06-15virtuoso: Use /run/current-system/... path to bash in container.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Use /run/current-system/... path to bash in container.
2022-06-15virtuoso: Enter all namespaces with `nsenter -a'.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Enter all namespaces with `nsenter -a'.
2022-06-14topics: virtuoso: Fix wrong grammarBonfaceKilz
2022-06-14topics: virtuoso: Note that conductor interface isn't supportedBonfaceKilz
2022-06-14topics: virtuoso: Note that "/dev/sdX" is non-consequentialBonfaceKilz
2022-06-14topics: virtuoso: Add extra docs on how to run sparql using web UIBonfaceKilz
* topics/systems/virtuoso.gmi (Running SPARQL Queries using isql): Add more detailed section of how to access SPARQL using both the web interface and sqli.
2022-06-14topics: virtuoso: Document how to inspect a system-containerBonfaceKilz
* topics/systems/virtuoso.gmi (Running virtuoso in a guix system container): Demonstrate, using `nsenter`, how one would inspect a system container.
2022-06-14topics: virtuoso: Document how to run sparql queries using isqlBonfaceKilz
* topics/systems/virtuoso.gmi (Running Queries using isql): Document how to use isql to run sparql queries using a guix shell.
2022-06-14virtuoso: Remove unnecessary root file system definition.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso): Remove unnecessary root file system definition.
2022-06-14guix-profiles: Use public path to guix-bioinformatics channel.Arun Isaac
An "Arun-specific path" was accidentally added in an earlier commit.
2022-06-14topics: Explain use of Guix profiles for development.Arun Isaac
* topics/guix-profiles.gmi: New file.
2022-06-09topics: genotype-database: Use new functional interface.Arun Isaac
* topics/genotype-database.gmi: Use new functional interface.
2022-06-08topics: genotype-database: Document reading columns.Arun Isaac
* topics/genotype-database.gmi: Document reading columns in Python.
2022-06-07topics: virtuoso: Fix misspelling of "Protocol".Arun Isaac
* topics/systems/virtuoso.gmi (Loading data into virtuoso): Fix misspelling of "Protocol" changing "Protocal" to "Protocol".
2022-06-03topics: Document genotype databases.Arun Isaac
* topics/genotype-database.gmi: New file.
2022-05-26Move post on debugging with pudb into it's TopicsBonfaceKilz
2022-05-16New Issue: Remove extra pcorrs optionsFrederick Muriuki Muriithi
2022-05-06Added link; minor text editsPjotr Prins
2022-05-06List developer links.Arun Isaac
* topics/links.gmi: New file. * index.skb: Link to it.
2022-05-05topics: Move virtuoso passwords documentation.Arun Isaac
* topics/systems/virtuoso.gmi (Virtuoso users and setting their passwords): Rename to ... (Set passwords for virtuoso users): ... this, and move to after "Running virtuoso".
2022-05-05topics: Simplify virtuoso introduction.Arun Isaac
* topics/systems/virtuoso.gmi: Simplify introduction.
2022-05-05topics: Document minimal virtuoso configuration.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso): Document manually running virtuoso on the command-line with a minimal configuration. (Virtuoso.ini): Delete section.
2022-05-05topics: Document RDF validation, virtuoso graph loading and deletion.Arun Isaac
* topics/systems/virtuoso.gmi (Loading data into virtuoso): Document RDF validation, virtuoso graph loading and deletion.
2022-04-29topics: Fix graph name in virtuoso upload.Arun Isaac
* topics/systems/virtuoso.gmi (SPARQL 1.1 Graph Store HTTP Protocol): Fix graph name.
2022-04-29topics: Document loading data into virtuoso.Arun Isaac
* topics/systems/virtuoso.gmi (Loading data into virtuoso): Organize into new section.
2022-04-29topics: Group running virtuoso into section.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso): Group running virtuoso into section.
2022-04-29topics: Remove blank lines in virtuoso topic.Arun Isaac
* topics/systems/virtuoso.gmi: Remove unnecessary blank lines.
2022-04-29topics: Switch to guix shell in virtuoso topic.Arun Isaac
* topics/systems/virtuoso.gmi: Switch from guix environment to guix shell.
2022-04-29topics: Document virtuoso user configuration.Arun Isaac
* topics/systems/virtuoso.gmi (Virtuoso users and setting their passwords): New section.
2022-04-29topics: Retitle and detag virtuoso topic.Arun Isaac
* topics/systems/virtuoso.gmi: Set title to "Virtuoso". Remove tags.
2022-04-20topics: Document running virtuoso in a Guix container.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso in a guix system container): New subsubsection.
2022-04-08riscv: Post on building Guix packages for RISC-V.Arun Isaac
* topics/riscv/building-guix-packages-for-riscv.gmi: New file.
2022-04-04Update on documentation progressFrederick Muriuki Muriithi
2022-03-30Rename inserting_traits.gmi to inserting-traits.gmizsloan
Didn't notice that the file-names used hyphens instead of underscores
2022-03-30Create inserting_traits.gmizsloan
2022-03-28List top 10 tests with notes from RobBonfaceKilz
2022-03-28Add notes on traits to the gn-hacking-documentation issueFrederick Muriuki Muriithi
2022-03-22Close `Migrate GN1 Clustering` issueFrederick Muriuki Muriithi
2022-03-22Add notes from email correspondence on testing GN2Frederick Muriuki Muriithi
2022-03-16Tag and Prioritise more issuesFrederick Muriuki Muriithi
2022-03-14Break out file into 2 separate issuesFrederick Muriuki Muriithi
2022-03-14Tag and prioritise a bunch of issuesFrederick Muriuki Muriithi
2022-03-11Add 'Hacking Documentation' IssueFrederick Muriuki Muriithi
To help with understanding the system and its implementation, for both new and experienced contributors, this commit introduces a document to track some of the undocumented things about the system.
2022-03-05bbb: update headerjgart
2022-03-05bbb: add notes on how nixnet deploys big blue buttonjgart
2022-03-05add notes on bbb installationjgart
2022-02-11topics: lisp: add note on using lisp condition system in productionjgart
2022-02-10Comment on testing interface for automated tests.Arun Isaac
2022-02-10Merge branch 'main' of github.com:genenetwork/gn-gemtext-threadsFrederick Muriuki Muriithi
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