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2021-10-06sheepdog: update tasksPjotr Prins
2021-10-06Sheepdog and machine roomPjotr Prins
2021-10-06sheepdogPjotr Prins
2021-10-06backupsPjotr Prins
2021-10-04Add topic on reproducibilityjgart
2021-10-01Pjotr notesPjotr Prins
2021-10-01New Issue: Non-Clustered and Flippable HeatmapsFrederick Muriuki Muriithi
* Add new "issue" to track the migration of heatmaps without the dendrograms and also allow the flipping of the heatmap from horizontal to vertical orientations and vice-versa.
2021-10-01Adds guix container topic to notebooksjgart
2021-10-01Add jupyter cli options link to our notes on jupyterjgart
2021-09-29backupsPjotr Prins
2021-09-24Add tasksPjotr Prins
2021-09-24Reinstate backups to epysodePjotr Prins
2021-09-22Add binderlite static assets issue to issues directoryjgart
2021-09-20Add tags sectionFrederick Muriuki Muriithi
* Add a tags section to track things like "assigned to" etc.
2021-09-20More details regarding error contextjgart
2021-09-20Add error regarding static assets after forwarding binderlite with nginxjgart
2021-09-20Adds nginx question regarding $rest argjgart
https://git.genenetwork.org/jgart/binderlite/src/branch/master/nginx.conf#L36
2021-09-20Add binderlite port map that I'm currently usingjgart
2021-09-20Adds feature request idea for GeneNetwork CLIjgart
closes https://github.com/genenetwork/genenetwork3/issues/39
2021-09-17Added issue on BNW not responding.Pjotr Prins
2021-09-16Add topic for authentication workBonfaceKilz
2021-09-15tasksPjotr Prins
2021-09-15Remove kanban symlinks and add tagPjotr Prins
2021-09-13Adds --ad-hoc to guix environment commandjgart
Python dependencies are not available unless I use --ad-hoc or -m
2021-09-10Comments on JupyterPjotr Prins
2021-09-10kill-jupyter permissions on penguin2jgart
I want to run the following on penguin2: ps aux | grep jupyter | awk '{ print $2 }' | xargs kill -9
2021-09-09Add current user-stories for binderlitejgart
* Next Steps ** Optimizations *** Uniquely identify last built notebook *** Shutdown notebook and save to memory *** Shutdown kernels gracefully *** guix-kernel (AKA guix-jupyter) runs by default in a container
2021-09-09Update issue with progressMuriithi Frederick Muriuki
2021-09-09Merge branch 'main' of github.com:genenetwork/gn-gemtext-threadsMuriithi Frederick Muriuki
2021-09-09Update status of implementation effortsMuriithi Frederick Muriuki
* topics/gn1-migration-to-gn2/clustering.gmi: update status * topics/gn1-migration-to-gn2/sample_clustering_heatmap.png: add missing sample heatmap image
2021-09-08Add extra topic on adding delete button for datasetsBonfaceKilz
2021-09-01JupyterPjotr Prins
2021-08-31Add websocketd as a possible alternative to xtermjsjgart
Turn any program that uses STDIN/STDOUT into a WebSocket server. Like inetd, but for WebSockets.
2021-08-31virtuoso: remove password to avoid confusionPjotr Prins
2021-08-31pluto service and working on fallbacksPjotr Prins
2021-08-31Update with progressMuriithi Frederick Muriuki
* Update issue with progress on genotype files
2021-08-30Update with progress and notesMuriithi Frederick Muriuki
* Update issue with notes on traits file and strains in genotype file * Add notes on required TODOs
2021-08-30Update issue with progress and notesMuriithi Frederick Muriuki
* Add notes on progress * Add notes on the genotype files, that is still not quite clear, to help with tracing the flow of information
2021-08-27Instructions for virtuosoPjotr Prins
2021-08-26Merge branch 'main' of github.com:genenetwork/gn-gemtext-threadsMuriithi Frederick Muriuki
2021-08-26Update issue with findings on rust-qtlreaperMuriithi Frederick Muriuki
* The usage of ~rust-qtlreaper~ in GN2 is not quite clear. This commit details the findings of the search for the usage of ~rust-qtlreaper~ in GN2 and the attempts to replicate in GN3.
2021-08-22Adds TODO item (unit tests)jgart
2021-08-22Adds TODO itemjgart
2021-08-22Add current TODOsjgart
2021-08-22Adds basic working demojgart
2021-08-20Update with progressMuriithi Frederick Muriuki
* Note use of QTLReaper * Update with notes on newly migrated portions of code
2021-08-20Update issue with write-up on heatmap image generationMuriithi Frederick Muriuki
* Work through the migrated code, and the old GN1 code and write-up a flow of the data, to assist in figuring out the differences in the data. The write-up helped realise that the code migrated so far only helps with the "distance" lines, and there is still need to figure out, and compute or lay out the data needed for the actual heatmap generation.
2021-08-20Update issue with notes for 2021-08-17Muriithi Frederick Muriuki
* Update issue with some progress report.
2021-08-16Moved gemma issuesPjotr Prins
2021-08-16issuePjotr Prins
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