| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-07-19 | Rescue testing issue from topics. | Arun Isaac | |
| 2022-07-18 | Add 'Annotations' section | Frederick Muriuki Muriithi | |
| 2022-07-18 | Add section on Platforms, Groups, Studies and Datasets. | Frederick Muriuki Muriithi | |
| 2022-07-06 | Document how to update penguin2 mariadb to the production database. | Arun Isaac | |
| * topics/systems/mariadb/mariadb.gmi (Update MariaDB on penguin2 to the latest production database): New section. | |||
| 2022-07-05 | Describe how to extract TS data from a provided dataset | BonfaceKilz | |
| * topics/data-uploads/datasets.gmi: New file. | |||
| 2022-07-01 | Rescue issues lost in the topics/systems/mariadb directory. | Arun Isaac | |
| 2022-07-01 | Move issues lost inside the topics directory. | Arun Isaac | |
| 2022-06-24 | virtuoso: Document first time upload failure with large files. | Arun Isaac | |
| * topics/systems/virtuoso.gmi (Loading data into virtuoso): Document first time upload failure with large files. | |||
| 2022-06-22 | genotype-database: Fold long code lines. | Arun Isaac | |
| * topics/genotype-database.gmi (Database Layout): Fold long code lines. | |||
| 2022-06-22 | genotype-database: Use '*' as list bullets. | Arun Isaac | |
| * topics/genotype-database.gmi [Database layout]: Use '*' as list bullets instead of '-'. | |||
| 2022-06-21 | genotype-database: Document design and database layout. | Arun Isaac | |
| * topics/genotype-database.gmi (Database layout): New section. | |||
| 2022-06-21 | genotype-database: Document reading the entire matrix. | Arun Isaac | |
| * topics/genotype-database.gmi: Document reading the entire matrix using the genodb.nparray function. | |||
| 2022-06-15 | virtuoso: Document hack to get PID of container shepherd. | Arun Isaac | |
| * topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Document hack to get PID of container shepherd. | |||
| 2022-06-15 | virtuoso: Use /run/current-system/... path to bash in container. | Arun Isaac | |
| * topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Use /run/current-system/... path to bash in container. | |||
| 2022-06-15 | virtuoso: Enter all namespaces with `nsenter -a'. | Arun Isaac | |
| * topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Enter all namespaces with `nsenter -a'. | |||
| 2022-06-14 | topics: virtuoso: Fix wrong grammar | BonfaceKilz | |
| 2022-06-14 | topics: virtuoso: Note that conductor interface isn't supported | BonfaceKilz | |
| 2022-06-14 | topics: virtuoso: Note that "/dev/sdX" is non-consequential | BonfaceKilz | |
| 2022-06-14 | topics: virtuoso: Add extra docs on how to run sparql using web UI | BonfaceKilz | |
| * topics/systems/virtuoso.gmi (Running SPARQL Queries using isql): Add more detailed section of how to access SPARQL using both the web interface and sqli. | |||
| 2022-06-14 | topics: virtuoso: Document how to inspect a system-container | BonfaceKilz | |
| * topics/systems/virtuoso.gmi (Running virtuoso in a guix system container): Demonstrate, using `nsenter`, how one would inspect a system container. | |||
| 2022-06-14 | topics: virtuoso: Document how to run sparql queries using isql | BonfaceKilz | |
| * topics/systems/virtuoso.gmi (Running Queries using isql): Document how to use isql to run sparql queries using a guix shell. | |||
| 2022-06-14 | virtuoso: Remove unnecessary root file system definition. | Arun Isaac | |
| * topics/systems/virtuoso.gmi (Running virtuoso): Remove unnecessary root file system definition. | |||
| 2022-06-14 | guix-profiles: Use public path to guix-bioinformatics channel. | Arun Isaac | |
| An "Arun-specific path" was accidentally added in an earlier commit. | |||
| 2022-06-14 | topics: Explain use of Guix profiles for development. | Arun Isaac | |
| * topics/guix-profiles.gmi: New file. | |||
| 2022-06-09 | topics: genotype-database: Use new functional interface. | Arun Isaac | |
| * topics/genotype-database.gmi: Use new functional interface. | |||
| 2022-06-08 | topics: genotype-database: Document reading columns. | Arun Isaac | |
| * topics/genotype-database.gmi: Document reading columns in Python. | |||
| 2022-06-07 | topics: virtuoso: Fix misspelling of "Protocol". | Arun Isaac | |
| * topics/systems/virtuoso.gmi (Loading data into virtuoso): Fix misspelling of "Protocol" changing "Protocal" to "Protocol". | |||
| 2022-06-03 | topics: Document genotype databases. | Arun Isaac | |
| * topics/genotype-database.gmi: New file. | |||
| 2022-05-26 | Move post on debugging with pudb into it's Topics | BonfaceKilz | |
| 2022-05-16 | New Issue: Remove extra pcorrs options | Frederick Muriuki Muriithi | |
| 2022-05-06 | Added link; minor text edits | Pjotr Prins | |
| 2022-05-06 | List developer links. | Arun Isaac | |
| * topics/links.gmi: New file. * index.skb: Link to it. | |||
| 2022-05-05 | topics: Move virtuoso passwords documentation. | Arun Isaac | |
| * topics/systems/virtuoso.gmi (Virtuoso users and setting their passwords): Rename to ... (Set passwords for virtuoso users): ... this, and move to after "Running virtuoso". | |||
| 2022-05-05 | topics: Simplify virtuoso introduction. | Arun Isaac | |
| * topics/systems/virtuoso.gmi: Simplify introduction. | |||
| 2022-05-05 | topics: Document minimal virtuoso configuration. | Arun Isaac | |
| * topics/systems/virtuoso.gmi (Running virtuoso): Document manually running virtuoso on the command-line with a minimal configuration. (Virtuoso.ini): Delete section. | |||
| 2022-05-05 | topics: Document RDF validation, virtuoso graph loading and deletion. | Arun Isaac | |
| * topics/systems/virtuoso.gmi (Loading data into virtuoso): Document RDF validation, virtuoso graph loading and deletion. | |||
| 2022-04-29 | topics: Fix graph name in virtuoso upload. | Arun Isaac | |
| * topics/systems/virtuoso.gmi (SPARQL 1.1 Graph Store HTTP Protocol): Fix graph name. | |||
| 2022-04-29 | topics: Document loading data into virtuoso. | Arun Isaac | |
| * topics/systems/virtuoso.gmi (Loading data into virtuoso): Organize into new section. | |||
| 2022-04-29 | topics: Group running virtuoso into section. | Arun Isaac | |
| * topics/systems/virtuoso.gmi (Running virtuoso): Group running virtuoso into section. | |||
| 2022-04-29 | topics: Remove blank lines in virtuoso topic. | Arun Isaac | |
| * topics/systems/virtuoso.gmi: Remove unnecessary blank lines. | |||
| 2022-04-29 | topics: Switch to guix shell in virtuoso topic. | Arun Isaac | |
| * topics/systems/virtuoso.gmi: Switch from guix environment to guix shell. | |||
| 2022-04-29 | topics: Document virtuoso user configuration. | Arun Isaac | |
| * topics/systems/virtuoso.gmi (Virtuoso users and setting their passwords): New section. | |||
| 2022-04-29 | topics: Retitle and detag virtuoso topic. | Arun Isaac | |
| * topics/systems/virtuoso.gmi: Set title to "Virtuoso". Remove tags. | |||
| 2022-04-20 | topics: Document running virtuoso in a Guix container. | Arun Isaac | |
| * topics/systems/virtuoso.gmi (Running virtuoso in a guix system container): New subsubsection. | |||
| 2022-04-08 | riscv: Post on building Guix packages for RISC-V. | Arun Isaac | |
| * topics/riscv/building-guix-packages-for-riscv.gmi: New file. | |||
| 2022-04-04 | Update on documentation progress | Frederick Muriuki Muriithi | |
| 2022-03-30 | Rename inserting_traits.gmi to inserting-traits.gmi | zsloan | |
| Didn't notice that the file-names used hyphens instead of underscores | |||
| 2022-03-30 | Create inserting_traits.gmi | zsloan | |
| 2022-03-28 | List top 10 tests with notes from Rob | BonfaceKilz | |
| 2022-03-28 | Add notes on traits to the gn-hacking-documentation issue | Frederick Muriuki Muriithi | |
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index : gn-gemtext | |
| GeneNetwork gemtext knowledge base and issue tracker (mirror right now) |
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