| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2021-09-15 | Remove kanban symlinks and add tag | Pjotr Prins | |
| 2021-09-13 | Adds --ad-hoc to guix environment command | jgart | |
| Python dependencies are not available unless I use --ad-hoc or -m | |||
| 2021-09-10 | Comments on Jupyter | Pjotr Prins | |
| 2021-09-10 | kill-jupyter permissions on penguin2 | jgart | |
| I want to run the following on penguin2: ps aux | grep jupyter | awk '{ print $2 }' | xargs kill -9 | |||
| 2021-09-09 | Add current user-stories for binderlite | jgart | |
| * Next Steps ** Optimizations *** Uniquely identify last built notebook *** Shutdown notebook and save to memory *** Shutdown kernels gracefully *** guix-kernel (AKA guix-jupyter) runs by default in a container | |||
| 2021-09-09 | Update issue with progress | Muriithi Frederick Muriuki | |
| 2021-09-09 | Merge branch 'main' of github.com:genenetwork/gn-gemtext-threads | Muriithi Frederick Muriuki | |
| 2021-09-09 | Update status of implementation efforts | Muriithi Frederick Muriuki | |
| * topics/gn1-migration-to-gn2/clustering.gmi: update status * topics/gn1-migration-to-gn2/sample_clustering_heatmap.png: add missing sample heatmap image | |||
| 2021-09-08 | Add extra topic on adding delete button for datasets | BonfaceKilz | |
| 2021-09-01 | Jupyter | Pjotr Prins | |
| 2021-08-31 | Add websocketd as a possible alternative to xtermjs | jgart | |
| Turn any program that uses STDIN/STDOUT into a WebSocket server. Like inetd, but for WebSockets. | |||
| 2021-08-31 | virtuoso: remove password to avoid confusion | Pjotr Prins | |
| 2021-08-31 | pluto service and working on fallbacks | Pjotr Prins | |
| 2021-08-31 | Update with progress | Muriithi Frederick Muriuki | |
| * Update issue with progress on genotype files | |||
| 2021-08-30 | Update with progress and notes | Muriithi Frederick Muriuki | |
| * Update issue with notes on traits file and strains in genotype file * Add notes on required TODOs | |||
| 2021-08-30 | Update issue with progress and notes | Muriithi Frederick Muriuki | |
| * Add notes on progress * Add notes on the genotype files, that is still not quite clear, to help with tracing the flow of information | |||
| 2021-08-27 | Instructions for virtuoso | Pjotr Prins | |
| 2021-08-26 | Merge branch 'main' of github.com:genenetwork/gn-gemtext-threads | Muriithi Frederick Muriuki | |
| 2021-08-26 | Update issue with findings on rust-qtlreaper | Muriithi Frederick Muriuki | |
| * The usage of ~rust-qtlreaper~ in GN2 is not quite clear. This commit details the findings of the search for the usage of ~rust-qtlreaper~ in GN2 and the attempts to replicate in GN3. | |||
| 2021-08-22 | Adds TODO item (unit tests) | jgart | |
| 2021-08-22 | Adds TODO item | jgart | |
| 2021-08-22 | Add current TODOs | jgart | |
| 2021-08-22 | Adds basic working demo | jgart | |
| 2021-08-20 | Update with progress | Muriithi Frederick Muriuki | |
| * Note use of QTLReaper * Update with notes on newly migrated portions of code | |||
| 2021-08-20 | Update issue with write-up on heatmap image generation | Muriithi Frederick Muriuki | |
| * Work through the migrated code, and the old GN1 code and write-up a flow of the data, to assist in figuring out the differences in the data. The write-up helped realise that the code migrated so far only helps with the "distance" lines, and there is still need to figure out, and compute or lay out the data needed for the actual heatmap generation. | |||
| 2021-08-20 | Update issue with notes for 2021-08-17 | Muriithi Frederick Muriuki | |
| * Update issue with some progress report. | |||
| 2021-08-16 | Moved gemma issues | Pjotr Prins | |
| 2021-08-16 | issue | Pjotr Prins | |
| 2021-08-14 | Fixing gemma issue gh#210 | Pjotr Prins | |
| 2021-08-13 | Added file on LMMs | Pjotr Prins | |
| 2021-08-12 | Add notes on differing colour scales | Muriithi Frederick Muriuki | |
| * The heatmaps in genenetwork1 have differing colour scales that the user can select, leading to a more complex implementation. This commit details some of the issues with the colour scales, and the possible places to look into to help with the implementation. | |||
| 2021-08-12 | Mention python-pooch in guix. | jgart | |
| https://issues.guix.gnu.org/47022 https://guix.gnu.org/packages/python-pooch-1.3.0/ | |||
| 2021-08-11 | Update issue with notes on proof-of-concept explorations | Muriithi Frederick Muriuki | |
| * In the migration over from genenetwork1 to genenetwork3, there is a change in the libraries used, and even in the layout of the code. This necessitates the exploration of some features of the available libraries to get the work done as appropriate. In this commit, there is some detail of the exploratory results, complete with a code snippet to give an idea of what is possible, and what is still pending exploration. | |||
| 2021-08-07 | Started on terminal output | Pjotr Prins | |
| 2021-08-06 | Add current WIP code repository links | jgart | |
| 2021-08-06 | Update answer for two questions | jgart | |
| 2021-08-06 | Current Notebook Launcher Issues | jgart | |
| 2021-08-01 | typo | Pjotr Prins | |
| 2021-07-28 | Add misc binder lite ideas | jgart | |
| Should binder lite be a distribution of GNU Guix System? | |||
| 2021-07-28 | Add current questions I have to answer | jgart | |
| 2021-07-28 | Add next development steps | jgart | |
| 2021-07-28 | Change numbered lists to unordered lists | jgart | |
| 2021-07-27 | Update initial design ideas | jgart | |
| 2021-07-27 | Change repo2guix to guix-notebook-launcher | jgart | |
| 2021-07-26 | Initial ideas for binderlite front end and backend | jgart | |
| 2021-07-26 | Initial design ideas for repo2guix guile library/cli tool | jgart | |
| 2021-07-22 | Update schema | Pjotr Prins | |
| 2021-07-22 | Move editing-data file | Pjotr Prins | |
| 2021-07-21 | Fix links(gemtext) | BonfaceKilz | |
| 2021-07-21 | Add some docs on how to edit data(probeset/ traits) from gn2 | BonfaceKilz | |
 |
index : gn-gemtext | |
| GeneNetwork gemtext knowledge base and issue tracker (mirror right now) |
| summaryrefslogtreecommitdiff |