| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2021-10-07 | Tux02 is going to run production | Pjotr Prins | |
| 2021-10-07 | GN1 time machines | Pjotr Prins | |
| 2021-10-06 | sheepdog: update tasks | Pjotr Prins | |
| 2021-10-06 | Sheepdog and machine room | Pjotr Prins | |
| 2021-10-06 | sheepdog | Pjotr Prins | |
| 2021-10-06 | backups | Pjotr Prins | |
| 2021-10-04 | Add topic on reproducibility | jgart | |
| 2021-10-01 | Pjotr notes | Pjotr Prins | |
| 2021-10-01 | New Issue: Non-Clustered and Flippable Heatmaps | Frederick Muriuki Muriithi | |
| * Add new "issue" to track the migration of heatmaps without the dendrograms and also allow the flipping of the heatmap from horizontal to vertical orientations and vice-versa. | |||
| 2021-10-01 | Adds guix container topic to notebooks | jgart | |
| 2021-10-01 | Add jupyter cli options link to our notes on jupyter | jgart | |
| 2021-09-29 | backups | Pjotr Prins | |
| 2021-09-24 | Add tasks | Pjotr Prins | |
| 2021-09-24 | Reinstate backups to epysode | Pjotr Prins | |
| 2021-09-22 | Add binderlite static assets issue to issues directory | jgart | |
| 2021-09-20 | Add tags section | Frederick Muriuki Muriithi | |
| * Add a tags section to track things like "assigned to" etc. | |||
| 2021-09-20 | More details regarding error context | jgart | |
| 2021-09-20 | Add error regarding static assets after forwarding binderlite with nginx | jgart | |
| 2021-09-20 | Adds nginx question regarding $rest arg | jgart | |
| https://git.genenetwork.org/jgart/binderlite/src/branch/master/nginx.conf#L36 | |||
| 2021-09-20 | Add binderlite port map that I'm currently using | jgart | |
| 2021-09-20 | Adds feature request idea for GeneNetwork CLI | jgart | |
| closes https://github.com/genenetwork/genenetwork3/issues/39 | |||
| 2021-09-17 | Added issue on BNW not responding. | Pjotr Prins | |
| 2021-09-16 | Add topic for authentication work | BonfaceKilz | |
| 2021-09-15 | tasks | Pjotr Prins | |
| 2021-09-15 | Remove kanban symlinks and add tag | Pjotr Prins | |
| 2021-09-13 | Adds --ad-hoc to guix environment command | jgart | |
| Python dependencies are not available unless I use --ad-hoc or -m | |||
| 2021-09-10 | Comments on Jupyter | Pjotr Prins | |
| 2021-09-10 | kill-jupyter permissions on penguin2 | jgart | |
| I want to run the following on penguin2: ps aux | grep jupyter | awk '{ print $2 }' | xargs kill -9 | |||
| 2021-09-09 | Add current user-stories for binderlite | jgart | |
| * Next Steps ** Optimizations *** Uniquely identify last built notebook *** Shutdown notebook and save to memory *** Shutdown kernels gracefully *** guix-kernel (AKA guix-jupyter) runs by default in a container | |||
| 2021-09-09 | Update issue with progress | Muriithi Frederick Muriuki | |
| 2021-09-09 | Merge branch 'main' of github.com:genenetwork/gn-gemtext-threads | Muriithi Frederick Muriuki | |
| 2021-09-09 | Update status of implementation efforts | Muriithi Frederick Muriuki | |
| * topics/gn1-migration-to-gn2/clustering.gmi: update status * topics/gn1-migration-to-gn2/sample_clustering_heatmap.png: add missing sample heatmap image | |||
| 2021-09-08 | Add extra topic on adding delete button for datasets | BonfaceKilz | |
| 2021-09-01 | Jupyter | Pjotr Prins | |
| 2021-08-31 | Add websocketd as a possible alternative to xtermjs | jgart | |
| Turn any program that uses STDIN/STDOUT into a WebSocket server. Like inetd, but for WebSockets. | |||
| 2021-08-31 | virtuoso: remove password to avoid confusion | Pjotr Prins | |
| 2021-08-31 | pluto service and working on fallbacks | Pjotr Prins | |
| 2021-08-31 | Update with progress | Muriithi Frederick Muriuki | |
| * Update issue with progress on genotype files | |||
| 2021-08-30 | Update with progress and notes | Muriithi Frederick Muriuki | |
| * Update issue with notes on traits file and strains in genotype file * Add notes on required TODOs | |||
| 2021-08-30 | Update issue with progress and notes | Muriithi Frederick Muriuki | |
| * Add notes on progress * Add notes on the genotype files, that is still not quite clear, to help with tracing the flow of information | |||
| 2021-08-27 | Instructions for virtuoso | Pjotr Prins | |
| 2021-08-26 | Merge branch 'main' of github.com:genenetwork/gn-gemtext-threads | Muriithi Frederick Muriuki | |
| 2021-08-26 | Update issue with findings on rust-qtlreaper | Muriithi Frederick Muriuki | |
| * The usage of ~rust-qtlreaper~ in GN2 is not quite clear. This commit details the findings of the search for the usage of ~rust-qtlreaper~ in GN2 and the attempts to replicate in GN3. | |||
| 2021-08-22 | Adds TODO item (unit tests) | jgart | |
| 2021-08-22 | Adds TODO item | jgart | |
| 2021-08-22 | Add current TODOs | jgart | |
| 2021-08-22 | Adds basic working demo | jgart | |
| 2021-08-20 | Update with progress | Muriithi Frederick Muriuki | |
| * Note use of QTLReaper * Update with notes on newly migrated portions of code | |||
| 2021-08-20 | Update issue with write-up on heatmap image generation | Muriithi Frederick Muriuki | |
| * Work through the migrated code, and the old GN1 code and write-up a flow of the data, to assist in figuring out the differences in the data. The write-up helped realise that the code migrated so far only helps with the "distance" lines, and there is still need to figure out, and compute or lay out the data needed for the actual heatmap generation. | |||
| 2021-08-20 | Update issue with notes for 2021-08-17 | Muriithi Frederick Muriuki | |
| * Update issue with some progress report. | |||
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index : gn-gemtext | |
| GeneNetwork gemtext knowledge base and issue tracker (mirror right now) |
| summaryrefslogtreecommitdiff |