| Age | Commit message (Expand) | Author |
|---|
| 2022-05-16 | New Issue: Remove extra pcorrs options | Frederick Muriuki Muriithi |
| 2022-03-22 | Close `Migrate GN1 Clustering` issue | Frederick Muriuki Muriithi |
| 2022-03-16 | Tag and Prioritise more issues | Frederick Muriuki Muriithi |
| 2022-03-14 | Tag and prioritise a bunch of issues | Frederick Muriuki Muriithi |
| 2022-02-10 | Update tags for partial correlations...- Indicate that the feature is deployed and under test
- Rope in Zach and Rob who will spearhead the testing of the feature
| Frederick Muriuki Muriithi |
| 2021-12-22 | Update with results of profiling the code...* After profiling the code, we document our results and ideas on
future changes that would assist in optimising the code.
| Frederick Muriuki Muriithi |
| 2021-10-19 | Updates to partial correlations issue | Frederick Muriuki Muriithi |
| 2021-10-15 | Update issue with data/info flow...* Document the flow of data/information through the system to the
point where we get the partial correlations results.
This should help with future tracing of the implementation details,
and in extracting the implementation details to help with the
migration of the feature to GN3/GN2
| Frederick Muriuki Muriithi |
| 2021-10-15 | Add some tags...* Tag issue as a "migration" issue (that might be the wrong tag), and
also tag it as "in progress"
| Frederick Muriuki Muriithi |
| 2021-10-15 | Partial Correlations: Add notes on exploration results...* Add some notes on the properties of the existing Partial
Correlations feature as it exists in GN1
| Frederick Muriuki Muriithi |
| 2021-10-15 | Partial Correlations: New issue...* Create a new issue to track the migration of the partial
correlations feature from GN1 to GN3/GN2
| Frederick Muriuki Muriithi |
| 2021-10-15 | Mark all tasks for the issue as done | Frederick Muriuki Muriithi |
| 2021-10-01 | New Issue: Non-Clustered and Flippable Heatmaps...* Add new "issue" to track the migration of heatmaps without the
dendrograms and also allow the flipping of the heatmap from
horizontal to vertical orientations and vice-versa.
| Frederick Muriuki Muriithi |
| 2021-09-20 | Add tags section...* Add a tags section to track things like "assigned to" etc.
| Frederick Muriuki Muriithi |
| 2021-09-15 | Remove kanban symlinks and add tag | Pjotr Prins |
| 2021-09-09 | Update issue with progress | Muriithi Frederick Muriuki |
| 2021-09-09 | Update status of implementation efforts...* topics/gn1-migration-to-gn2/clustering.gmi: update status
* topics/gn1-migration-to-gn2/sample_clustering_heatmap.png: add
missing sample heatmap image
| Muriithi Frederick Muriuki |
| 2021-08-31 | Update with progress...* Update issue with progress on genotype files
| Muriithi Frederick Muriuki |
| 2021-08-30 | Update with progress and notes...* Update issue with notes on traits file and strains in genotype file
* Add notes on required TODOs
| Muriithi Frederick Muriuki |
| 2021-08-30 | Update issue with progress and notes...* Add notes on progress
* Add notes on the genotype files, that is still not quite clear, to
help with tracing the flow of information
| Muriithi Frederick Muriuki |
| 2021-08-26 | Update issue with findings on rust-qtlreaper...* The usage of ~rust-qtlreaper~ in GN2 is not quite clear. This commit
details the findings of the search for the usage of ~rust-qtlreaper~
in GN2 and the attempts to replicate in GN3.
| Muriithi Frederick Muriuki |
| 2021-08-20 | Update with progress...* Note use of QTLReaper
* Update with notes on newly migrated portions of code
| Muriithi Frederick Muriuki |
| 2021-08-20 | Update issue with write-up on heatmap image generation...* Work through the migrated code, and the old GN1 code and write-up a
flow of the data, to assist in figuring out the differences in the
data.
The write-up helped realise that the code migrated so far only helps
with the "distance" lines, and there is still need to figure out,
and compute or lay out the data needed for the actual heatmap
generation.
| Muriithi Frederick Muriuki |
| 2021-08-20 | Update issue with notes for 2021-08-17...* Update issue with some progress report.
| Muriithi Frederick Muriuki |
| 2021-08-12 | Add notes on differing colour scales...* The heatmaps in genenetwork1 have differing colour scales that the
user can select, leading to a more complex implementation.
This commit details some of the issues with the colour scales, and
the possible places to look into to help with the implementation.
| Muriithi Frederick Muriuki |
| 2021-08-12 | Mention python-pooch in guix....https://issues.guix.gnu.org/47022
https://guix.gnu.org/packages/python-pooch-1.3.0/
| jgart |
| 2021-08-11 | Update issue with notes on proof-of-concept explorations...* In the migration over from genenetwork1 to genenetwork3, there is a
change in the libraries used, and even in the layout of the
code. This necessitates the exploration of some features of the
available libraries to get the work done as appropriate.
In this commit, there is some detail of the exploratory results,
complete with a code snippet to give an idea of what is possible,
and what is still pending exploration.
| Muriithi Frederick Muriuki |
| 2021-07-22 | Move editing-data file | Pjotr Prins |
| 2021-07-21 | Fix links(gemtext) | BonfaceKilz |
| 2021-07-21 | Add some docs on how to edit data(probeset/ traits) from gn2 | BonfaceKilz |
| 2021-07-19 | Note the intertwining of computation and display | Muriithi Frederick Muriuki |
| 2021-07-19 | Fix gemini lists | Muriithi Frederick Muriuki |
| 2021-07-19 | Respond to initial topic notes...- Respond to issue note, and link produced images
| Muriithi Frederick Muriuki |
| 2021-07-18 | Add GN1 clustering | Pjotr Prins |
