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* topics/gn1-migration-to-gn2/clustering.gmi: update status
* topics/gn1-migration-to-gn2/sample_clustering_heatmap.png: add
missing sample heatmap image
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* Update issue with progress on genotype files
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* Update issue with notes on traits file and strains in genotype file
* Add notes on required TODOs
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* Add notes on progress
* Add notes on the genotype files, that is still not quite clear, to
help with tracing the flow of information
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* The usage of ~rust-qtlreaper~ in GN2 is not quite clear. This commit
details the findings of the search for the usage of ~rust-qtlreaper~
in GN2 and the attempts to replicate in GN3.
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* Note use of QTLReaper
* Update with notes on newly migrated portions of code
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* Work through the migrated code, and the old GN1 code and write-up a
flow of the data, to assist in figuring out the differences in the
data.
The write-up helped realise that the code migrated so far only helps
with the "distance" lines, and there is still need to figure out,
and compute or lay out the data needed for the actual heatmap
generation.
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* Update issue with some progress report.
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* The heatmaps in genenetwork1 have differing colour scales that the
user can select, leading to a more complex implementation.
This commit details some of the issues with the colour scales, and
the possible places to look into to help with the implementation.
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https://issues.guix.gnu.org/47022
https://guix.gnu.org/packages/python-pooch-1.3.0/
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* In the migration over from genenetwork1 to genenetwork3, there is a
change in the libraries used, and even in the layout of the
code. This necessitates the exploration of some features of the
available libraries to get the work done as appropriate.
In this commit, there is some detail of the exploratory results,
complete with a code snippet to give an idea of what is possible,
and what is still pending exploration.
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- Respond to issue note, and link produced images
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