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2023-06-23Add CI rethink GNSoC issue.Arun Isaac
2023-06-19Mark dumping data to LMDB as in-progressMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-06-19Create new issue on adding genotype files to RDFMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-06-19Close create-rdf-traits-page issueMunyoki Kilyungi
* issues/create-rdf-traits-page.gmi: Close issue. * issues/probeset-metadata-upload.gmi: New issue. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-06-18Move issue to topicPjotr Prins
2023-06-16Started design of split front-endPjotr Prins
2023-06-15issues: Update configuration issues.Frederick Muriuki Muriithi
2023-06-14Issue: Genenetwork2 configurationsFrederick Muriuki Muriithi
Add a plan of action to fix the configuration system for Genenetwork2
2023-06-09Update issue on configsFrederick Muriuki Muriithi
2023-06-09Close issue: Genenetwork3 Effective User IDFrederick Muriuki Muriithi
2023-06-06Add troubleshooting notes.Frederick Muriuki Muriithi
2023-06-06Add new issue regarding python3.10 upgrade in guixMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-06-05Issue: Add note on GN3 config.Frederick Muriuki Muriithi
2023-06-05issue: Proposition for more flexible configs.Frederick Muriuki Muriithi
2023-06-05bug: CI/CD: Process running under host user not container userFrederick Muriuki Muriithi
Expected GN3 to run under "genenetwork" user inside container, instead it runs under host user with UID 1000.
2023-06-03Reduced issue priority. Task mostly done.Pjotr Prins
2023-06-01issues: Rebuild xapian index conditionally.Arun Isaac
2023-05-30Close issue as completed.Frederick Muriuki Muriithi
2023-05-28Note on utf8 conversionPjotr Prins
2023-05-28mariadb indexingPjotr Prins
2023-05-27notesPjotr Prins
2023-05-24issues: Make Existing Data Public View: New issueFrederick Muriuki Muriithi
2023-05-23Close issue as completedFrederick Muriuki Muriithi
2023-05-22Close issues. New issue.Frederick Muriuki Muriithi
* issues/authentication_authorisation/enable-user-masquerade.gmi: New issue: Enable User Masquerade * issues/authentication_authorisation/migrate-user-accounts-from-redis.gmi Close issue: WONTFIX * issues/authentication_authorisation/migrate-user-collections.gmi: Close issue: completed * issues/authentication_authorisation/use-authorisation-code-flow-for-authentication.gmi Close issue: completed
2023-05-18Fix broken linksMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-18Fix broken linksMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-18Rename file and update associated linksMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-18Create new GN3 endpoints for phenotypes, genotypes and probesetsMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-11issues: Add notes on anonymous collectionsFrederick Muriuki Muriithi
2023-05-10issue: Update migration steps for user collectionsFrederick Muriuki Muriithi
With the knowledge of the format of user accounts in redis, provide a new set of steps for migrating user collections.
2023-05-10issue: Provide data format for user accounts in redisFrederick Muriuki Muriithi
Update the issue with the data format for the user accounts as stored in redis.
2023-05-09Add new issue on incorrect pmidsMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-08issues: Add details to "migrate user accounts from redis"Frederick Muriuki Muriithi
Add some more information on possible route to migrate the user details.
2023-05-08issues: New issue: Migrate User CollectionsFrederick Muriuki Muriithi
2023-05-08Issues: New issue: Authorisation Code FlowFrederick Muriuki Muriithi
Add an issue detailing the current state and calling for the move over to the "Authorisation Code Flow" for better security and to enable easier integration with other applications.
2023-05-05Document xapian search code architecture.Arun Isaac
2023-05-03Fix headingMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-03Update issueMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-03Update issue on dumping sample data to LMDBMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-03Delete duplicate issueMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-03Add issue regarding broken indexingMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-02Close genenetwork2 CD restart failure issue.Arun Isaac
2023-04-27Rename issue to be more specificMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-04-26Close issueMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-04-25Assign bonfacem to fallbacks and backup issueMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-04-25Add bonfacem to fallbacks-and-backups issueMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-04-24Remove .gmi from linkMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-04-24Fix broken linkMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-04-24Fix broken linkMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-04-21Add new taskMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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