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AgeCommit message (Expand)Author
2022-06-29Document new `tissue search' subcommand....* README.gmi (tissue): Document new `tissue search' subcommand. Arun Isaac
2022-06-29Remove static issue listings....* closed.skb, index.skb, team.skb, topics.skb: Delete files. * tissue.scm (#:web-files): Remove static issue listings. Arun Isaac
2022-06-29tissue.scm: Replace #:issue-files with #:indexed-documents....* tissue.scm (#:issue-files): Delete argument. (#:indexed-documents): Add argument. Arun Isaac
2022-06-26tissue.scm: Add more aliases....* tissue.scm (#:aliases): Add more aliases. Arun Isaac
2022-06-24virtuoso: Document first time upload failure with large files....* topics/systems/virtuoso.gmi (Loading data into virtuoso): Document first time upload failure with large files. Arun Isaac
2022-06-24Close issue.Frederick Muriuki Muriithi
2022-06-23Update: indicate completion of phase 1. Add answers to questionsFrederick Muriuki Muriithi
2022-06-23Update issue: Changes are done; awaiting deploymentFrederick Muriuki Muriithi
2022-06-23Update issue: Add notes and mark issue as closed.Frederick Muriuki Muriithi
2022-06-22genotype-database: Fold long code lines....* topics/genotype-database.gmi (Database Layout): Fold long code lines. Arun Isaac
2022-06-22genotype-database: Use '*' as list bullets....* topics/genotype-database.gmi [Database layout]: Use '*' as list bullets instead of '-'. Arun Isaac
2022-06-22style.css: Center and limit body width....Center and limit width of body to avoid having to scan long distances from left to right. Arun Isaac
2022-06-22style.css: Style pre tags....Style pre tags with a background color, border and a slightly larger bold font. Arun Isaac
2022-06-21genotype-database: Document design and database layout....* topics/genotype-database.gmi (Database layout): New section. Arun Isaac
2022-06-21genotype-database: Document reading the entire matrix....* topics/genotype-database.gmi: Document reading the entire matrix using the genodb.nparray function. Arun Isaac
2022-06-20misc-ui-fixes: Fix typoBonfaceKilz
2022-06-20Update "misc-ui-fixes"...Mark some TODOs with a "-". Also, make "tags" a sub-heading BonfaceKilz
2022-06-20Reassign "TempDataSet-object-has-no-attribute" to AlexBonfaceKilz
2022-06-20Assign to misc-ui-fixes to Munyoki and EthanBonfaceKilz
2022-06-20Update issue on misc-ui fixesBonfaceKilz
2022-06-15Fix typoBonfaceKilz
2022-06-15Fix URLSaunak Sen
2022-06-15Update fix-scree-plot.gmiSaunak Sen
2022-06-15update issue: implement parallel correlation with rustAlexander
2022-06-15virtuoso: Document hack to get PID of container shepherd....* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Document hack to get PID of container shepherd. Arun Isaac
2022-06-15virtuoso: Use /run/current-system/... path to bash in container....* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Use /run/current-system/... path to bash in container. Arun Isaac
2022-06-15virtuoso: Enter all namespaces with `nsenter -a'....* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Enter all namespaces with `nsenter -a'. Arun Isaac
2022-06-14topics: virtuoso: Fix wrong grammarBonfaceKilz
2022-06-14topics: virtuoso: Note that conductor interface isn't supportedBonfaceKilz
2022-06-14topics: virtuoso: Note that "/dev/sdX" is non-consequentialBonfaceKilz
2022-06-14topics: virtuoso: Add extra docs on how to run sparql using web UI...* topics/systems/virtuoso.gmi (Running SPARQL Queries using isql): Add more detailed section of how to access SPARQL using both the web interface and sqli. BonfaceKilz
2022-06-14topics: virtuoso: Document how to inspect a system-container...* topics/systems/virtuoso.gmi (Running virtuoso in a guix system container): Demonstrate, using `nsenter`, how one would inspect a system container. BonfaceKilz
2022-06-14topics: virtuoso: Document how to run sparql queries using isql...* topics/systems/virtuoso.gmi (Running Queries using isql): Document how to use isql to run sparql queries using a guix shell. BonfaceKilz
2022-06-14virtuoso: Remove unnecessary root file system definition....* topics/systems/virtuoso.gmi (Running virtuoso): Remove unnecessary root file system definition. Arun Isaac
2022-06-14guix-profiles: Use public path to guix-bioinformatics channel....An "Arun-specific path" was accidentally added in an earlier commit. Arun Isaac
2022-06-14List closed issues on a separate page....* closed.skb: New file. * index.skb: Link to closed.html instead of listing closed issues. * tissue.scm (#:web-files): Add closed.html. Arun Isaac
2022-06-14topics: Explain use of Guix profiles for development....* topics/guix-profiles.gmi: New file. Arun Isaac
2022-06-09Link to Continuous Integration....* index.skb: Link to Continuous Integration. Arun Isaac
2022-06-09topics: genotype-database: Use new functional interface....* topics/genotype-database.gmi: Use new functional interface. Arun Isaac
2022-06-08skinPjotr Prins
2022-06-08topics: genotype-database: Document reading columns....* topics/genotype-database.gmi: Document reading columns in Python. Arun Isaac
2022-06-07topics: virtuoso: Fix misspelling of "Protocol"....* topics/systems/virtuoso.gmi (Loading data into virtuoso): Fix misspelling of "Protocol" changing "Protocal" to "Protocol". Arun Isaac
2022-06-03topics: Document genotype databases....* topics/genotype-database.gmi: New file. Arun Isaac
2022-05-26Update issue with progress.Frederick Muriuki Muriithi
2022-05-26Move post on debugging with pudb into it's TopicsBonfaceKilz
2022-05-26Add blog post on using pdbBonfaceKilz
2022-05-26Add blog post on debugging using pdbBonfaceKilz
2022-05-26Close issue as completed.Frederick Muriuki Muriithi
2022-05-25Close some issuesBonfaceKilz
2022-05-25Update issue on editing metadataBonfaceKilz
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