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2022-06-15update issue: implement parallel correlation with rustAlexander
2022-06-15virtuoso: Document hack to get PID of container shepherd.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Document hack to get PID of container shepherd.
2022-06-15virtuoso: Use /run/current-system/... path to bash in container.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Use /run/current-system/... path to bash in container.
2022-06-15virtuoso: Enter all namespaces with `nsenter -a'.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Enter all namespaces with `nsenter -a'.
2022-06-14topics: virtuoso: Fix wrong grammarBonfaceKilz
2022-06-14topics: virtuoso: Note that conductor interface isn't supportedBonfaceKilz
2022-06-14topics: virtuoso: Note that "/dev/sdX" is non-consequentialBonfaceKilz
2022-06-14topics: virtuoso: Add extra docs on how to run sparql using web UIBonfaceKilz
* topics/systems/virtuoso.gmi (Running SPARQL Queries using isql): Add more detailed section of how to access SPARQL using both the web interface and sqli.
2022-06-14topics: virtuoso: Document how to inspect a system-containerBonfaceKilz
* topics/systems/virtuoso.gmi (Running virtuoso in a guix system container): Demonstrate, using `nsenter`, how one would inspect a system container.
2022-06-14topics: virtuoso: Document how to run sparql queries using isqlBonfaceKilz
* topics/systems/virtuoso.gmi (Running Queries using isql): Document how to use isql to run sparql queries using a guix shell.
2022-06-14virtuoso: Remove unnecessary root file system definition.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso): Remove unnecessary root file system definition.
2022-06-14guix-profiles: Use public path to guix-bioinformatics channel.Arun Isaac
An "Arun-specific path" was accidentally added in an earlier commit.
2022-06-14List closed issues on a separate page.Arun Isaac
* closed.skb: New file. * index.skb: Link to closed.html instead of listing closed issues. * tissue.scm (#:web-files): Add closed.html.
2022-06-14topics: Explain use of Guix profiles for development.Arun Isaac
* topics/guix-profiles.gmi: New file.
2022-06-09Link to Continuous Integration.Arun Isaac
* index.skb: Link to Continuous Integration.
2022-06-09topics: genotype-database: Use new functional interface.Arun Isaac
* topics/genotype-database.gmi: Use new functional interface.
2022-06-08skinPjotr Prins
2022-06-08topics: genotype-database: Document reading columns.Arun Isaac
* topics/genotype-database.gmi: Document reading columns in Python.
2022-06-07topics: virtuoso: Fix misspelling of "Protocol".Arun Isaac
* topics/systems/virtuoso.gmi (Loading data into virtuoso): Fix misspelling of "Protocol" changing "Protocal" to "Protocol".
2022-06-03topics: Document genotype databases.Arun Isaac
* topics/genotype-database.gmi: New file.
2022-05-26Update issue with progress.Frederick Muriuki Muriithi
2022-05-26Move post on debugging with pudb into it's TopicsBonfaceKilz
2022-05-26Add blog post on using pdbBonfaceKilz
2022-05-26Add blog post on debugging using pdbBonfaceKilz
2022-05-26Close issue as completed.Frederick Muriuki Muriithi
2022-05-25Close some issuesBonfaceKilz
2022-05-25Update issue on editing metadataBonfaceKilz
2022-05-19Add .gmi extensionzsloan
Forgot to add this when creating the file
2022-05-19Create fix-scree-plotzsloan
2022-05-19Close add-collection-import since it's finishedzsloan
2022-05-16Close issue with some updatesFrederick Muriuki Muriithi
2022-05-16New issue: Menu generation improvementsFrederick Muriuki Muriithi
2022-05-16New Issue: Remove extra pcorrs optionsFrederick Muriuki Muriithi
2022-05-16New Issue: Missing CI/CD DefinitionsFrederick Muriuki Muriithi
Issue tracks the implementation of missing CI/CD definitions for "service daemons"
2022-05-11Create fix-correlation-table.gmizsloan
2022-05-06Added link; minor text editsPjotr Prins
2022-05-06List developer links.Arun Isaac
* topics/links.gmi: New file. * index.skb: Link to it.
2022-05-05topics: Move virtuoso passwords documentation.Arun Isaac
* topics/systems/virtuoso.gmi (Virtuoso users and setting their passwords): Rename to ... (Set passwords for virtuoso users): ... this, and move to after "Running virtuoso".
2022-05-05topics: Simplify virtuoso introduction.Arun Isaac
* topics/systems/virtuoso.gmi: Simplify introduction.
2022-05-05topics: Document minimal virtuoso configuration.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso): Document manually running virtuoso on the command-line with a minimal configuration. (Virtuoso.ini): Delete section.
2022-05-05topics: Document RDF validation, virtuoso graph loading and deletion.Arun Isaac
* topics/systems/virtuoso.gmi (Loading data into virtuoso): Document RDF validation, virtuoso graph loading and deletion.
2022-05-05Track new issue on batch submitting unknown strainsBonfaceKilz
2022-05-05Track feedback from Zach and SuheetaBonfaceKilz
2022-05-04Update issue on editing-metadat-bugsBonfaceKilz
2022-05-04Fix typoBonfaceKilz
2022-05-04Update issue on editing the metadataBonfaceKilz
2022-05-03fix link syntaxAlexander
2022-05-02Update formatting againzsloan
Hopefully this time works correctly; it's weirdly difficult to find information about gemtext formatting online
2022-05-02Change formatting againzsloan
2022-05-02Change formattingzsloan
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