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2022-06-29style.css: Remove CSS rules for issue listings.Arun Isaac
2022-06-29Document new `tissue search' subcommand.Arun Isaac
* README.gmi (tissue): Document new `tissue search' subcommand.
2022-06-29Remove static issue listings.Arun Isaac
* closed.skb, index.skb, team.skb, topics.skb: Delete files. * tissue.scm (#:web-files): Remove static issue listings.
2022-06-29tissue.scm: Replace #:issue-files with #:indexed-documents.Arun Isaac
* tissue.scm (#:issue-files): Delete argument. (#:indexed-documents): Add argument.
2022-06-26tissue.scm: Add more aliases.Arun Isaac
* tissue.scm (#:aliases): Add more aliases.
2022-06-24virtuoso: Document first time upload failure with large files.Arun Isaac
* topics/systems/virtuoso.gmi (Loading data into virtuoso): Document first time upload failure with large files.
2022-06-24Close issue.Frederick Muriuki Muriithi
2022-06-23Update: indicate completion of phase 1. Add answers to questionsFrederick Muriuki Muriithi
2022-06-23Update issue: Changes are done; awaiting deploymentFrederick Muriuki Muriithi
2022-06-23Update issue: Add notes and mark issue as closed.Frederick Muriuki Muriithi
2022-06-22genotype-database: Fold long code lines.Arun Isaac
* topics/genotype-database.gmi (Database Layout): Fold long code lines.
2022-06-22genotype-database: Use '*' as list bullets.Arun Isaac
* topics/genotype-database.gmi [Database layout]: Use '*' as list bullets instead of '-'.
2022-06-22style.css: Center and limit body width.Arun Isaac
Center and limit width of body to avoid having to scan long distances from left to right.
2022-06-22style.css: Style pre tags.Arun Isaac
Style pre tags with a background color, border and a slightly larger bold font.
2022-06-21genotype-database: Document design and database layout.Arun Isaac
* topics/genotype-database.gmi (Database layout): New section.
2022-06-21genotype-database: Document reading the entire matrix.Arun Isaac
* topics/genotype-database.gmi: Document reading the entire matrix using the genodb.nparray function.
2022-06-20misc-ui-fixes: Fix typoBonfaceKilz
2022-06-20Update "misc-ui-fixes"BonfaceKilz
Mark some TODOs with a "-". Also, make "tags" a sub-heading
2022-06-20Reassign "TempDataSet-object-has-no-attribute" to AlexBonfaceKilz
2022-06-20Assign to misc-ui-fixes to Munyoki and EthanBonfaceKilz
2022-06-20Update issue on misc-ui fixesBonfaceKilz
2022-06-15Fix typoBonfaceKilz
2022-06-15Fix URLSaunak Sen
2022-06-15Update fix-scree-plot.gmiSaunak Sen
2022-06-15update issue: implement parallel correlation with rustAlexander
2022-06-15virtuoso: Document hack to get PID of container shepherd.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Document hack to get PID of container shepherd.
2022-06-15virtuoso: Use /run/current-system/... path to bash in container.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Use /run/current-system/... path to bash in container.
2022-06-15virtuoso: Enter all namespaces with `nsenter -a'.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso)[Running virtuoso in a guix system container]: Enter all namespaces with `nsenter -a'.
2022-06-14topics: virtuoso: Fix wrong grammarBonfaceKilz
2022-06-14topics: virtuoso: Note that conductor interface isn't supportedBonfaceKilz
2022-06-14topics: virtuoso: Note that "/dev/sdX" is non-consequentialBonfaceKilz
2022-06-14topics: virtuoso: Add extra docs on how to run sparql using web UIBonfaceKilz
* topics/systems/virtuoso.gmi (Running SPARQL Queries using isql): Add more detailed section of how to access SPARQL using both the web interface and sqli.
2022-06-14topics: virtuoso: Document how to inspect a system-containerBonfaceKilz
* topics/systems/virtuoso.gmi (Running virtuoso in a guix system container): Demonstrate, using `nsenter`, how one would inspect a system container.
2022-06-14topics: virtuoso: Document how to run sparql queries using isqlBonfaceKilz
* topics/systems/virtuoso.gmi (Running Queries using isql): Document how to use isql to run sparql queries using a guix shell.
2022-06-14virtuoso: Remove unnecessary root file system definition.Arun Isaac
* topics/systems/virtuoso.gmi (Running virtuoso): Remove unnecessary root file system definition.
2022-06-14guix-profiles: Use public path to guix-bioinformatics channel.Arun Isaac
An "Arun-specific path" was accidentally added in an earlier commit.
2022-06-14List closed issues on a separate page.Arun Isaac
* closed.skb: New file. * index.skb: Link to closed.html instead of listing closed issues. * tissue.scm (#:web-files): Add closed.html.
2022-06-14topics: Explain use of Guix profiles for development.Arun Isaac
* topics/guix-profiles.gmi: New file.
2022-06-09Link to Continuous Integration.Arun Isaac
* index.skb: Link to Continuous Integration.
2022-06-09topics: genotype-database: Use new functional interface.Arun Isaac
* topics/genotype-database.gmi: Use new functional interface.
2022-06-08skinPjotr Prins
2022-06-08topics: genotype-database: Document reading columns.Arun Isaac
* topics/genotype-database.gmi: Document reading columns in Python.
2022-06-07topics: virtuoso: Fix misspelling of "Protocol".Arun Isaac
* topics/systems/virtuoso.gmi (Loading data into virtuoso): Fix misspelling of "Protocol" changing "Protocal" to "Protocol".
2022-06-03topics: Document genotype databases.Arun Isaac
* topics/genotype-database.gmi: New file.
2022-05-26Update issue with progress.Frederick Muriuki Muriithi
2022-05-26Move post on debugging with pudb into it's TopicsBonfaceKilz
2022-05-26Add blog post on using pdbBonfaceKilz
2022-05-26Add blog post on debugging using pdbBonfaceKilz
2022-05-26Close issue as completed.Frederick Muriuki Muriithi
2022-05-25Close some issuesBonfaceKilz
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