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2021-09-15GN1 network graph issuePjotr Prins
2021-09-15New issue for GN1Pjotr Prins
2021-09-15Remove kanban symlinks and add tagPjotr Prins
2021-09-13Adds --ad-hoc to guix environment commandjgart
Python dependencies are not available unless I use --ad-hoc or -m
2021-09-10Comments on JupyterPjotr Prins
2021-09-10kill-jupyter permissions on penguin2jgart
I want to run the following on penguin2: ps aux | grep jupyter | awk '{ print $2 }' | xargs kill -9
2021-09-09Add current user-stories for binderlitejgart
* Next Steps ** Optimizations *** Uniquely identify last built notebook *** Shutdown notebook and save to memory *** Shutdown kernels gracefully *** guix-kernel (AKA guix-jupyter) runs by default in a container
2021-09-09Update issue with progressMuriithi Frederick Muriuki
2021-09-09Merge branch 'main' of github.com:genenetwork/gn-gemtext-threadsMuriithi Frederick Muriuki
2021-09-09Update status of implementation effortsMuriithi Frederick Muriuki
* topics/gn1-migration-to-gn2/clustering.gmi: update status * topics/gn1-migration-to-gn2/sample_clustering_heatmap.png: add missing sample heatmap image
2021-09-08Add extra topic on adding delete button for datasetsBonfaceKilz
2021-09-01JupyterPjotr Prins
2021-08-31Add websocketd as a possible alternative to xtermjsjgart
Turn any program that uses STDIN/STDOUT into a WebSocket server. Like inetd, but for WebSockets.
2021-08-31virtuoso: remove password to avoid confusionPjotr Prins
2021-08-31pluto service and working on fallbacksPjotr Prins
2021-08-31Update with progressMuriithi Frederick Muriuki
* Update issue with progress on genotype files
2021-08-30Update with progress and notesMuriithi Frederick Muriuki
* Update issue with notes on traits file and strains in genotype file * Add notes on required TODOs
2021-08-30Update issue with progress and notesMuriithi Frederick Muriuki
* Add notes on progress * Add notes on the genotype files, that is still not quite clear, to help with tracing the flow of information
2021-08-27Instructions for virtuosoPjotr Prins
2021-08-27Gemma issuePjotr Prins
2021-08-26Merge branch 'main' of github.com:genenetwork/gn-gemtext-threadsMuriithi Frederick Muriuki
2021-08-26Update issue with findings on rust-qtlreaperMuriithi Frederick Muriuki
* The usage of ~rust-qtlreaper~ in GN2 is not quite clear. This commit details the findings of the search for the usage of ~rust-qtlreaper~ in GN2 and the attempts to replicate in GN3.
2021-08-22Adds TODO item (unit tests)jgart
2021-08-22Adds TODO itemjgart
2021-08-22Add current TODOsjgart
2021-08-22Adds basic working demojgart
2021-08-20Update with progressMuriithi Frederick Muriuki
* Note use of QTLReaper * Update with notes on newly migrated portions of code
2021-08-20Update issue with write-up on heatmap image generationMuriithi Frederick Muriuki
* Work through the migrated code, and the old GN1 code and write-up a flow of the data, to assist in figuring out the differences in the data. The write-up helped realise that the code migrated so far only helps with the "distance" lines, and there is still need to figure out, and compute or lay out the data needed for the actual heatmap generation.
2021-08-20Update issue with notes for 2021-08-17Muriithi Frederick Muriuki
* Update issue with some progress report.
2021-08-16Add bitcoin linkPjotr Prins
2021-08-16gemma: add info by author of issuePjotr Prins
2021-08-16gemma: testing slow gemma with profilerPjotr Prins
2021-08-16Rename issue243Pjotr Prins
2021-08-16Moved gemma issuesPjotr Prins
2021-08-16issuePjotr Prins
2021-08-15add issue about using guix-pullEfraim Flashner
2021-08-15added issue about genecup running as rootEfraim Flashner
2021-08-14Fixing gemma issue gh#210Pjotr Prins
2021-08-13Added file on LMMsPjotr Prins
2021-08-12Add notes on differing colour scalesMuriithi Frederick Muriuki
* The heatmaps in genenetwork1 have differing colour scales that the user can select, leading to a more complex implementation. This commit details some of the issues with the colour scales, and the possible places to look into to help with the implementation.
2021-08-12Mention python-pooch in guix.jgart
https://issues.guix.gnu.org/47022 https://guix.gnu.org/packages/python-pooch-1.3.0/
2021-08-11Update issue with notes on proof-of-concept explorationsMuriithi Frederick Muriuki
* In the migration over from genenetwork1 to genenetwork3, there is a change in the libraries used, and even in the layout of the code. This necessitates the exploration of some features of the available libraries to get the work done as appropriate. In this commit, there is some detail of the exploratory results, complete with a code snippet to give an idea of what is possible, and what is still pending exploration.
2021-08-09Add authorisation issueBonfaceKilz
2021-08-09Create issue on fetching sample data from a given traitBonfaceKilz
2021-08-07gunicorn for GN3 addedPjotr Prins
2021-08-07Started on terminal outputPjotr Prins
2021-08-06Add current WIP code repository linksjgart
2021-08-06Update answer for two questionsjgart
2021-08-06Current Notebook Launcher Issuesjgart
2021-08-06correlations issuePjotr Prins
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