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2023-06-07Docs: OAuth2: Add notes on OAuth2 client registration.Frederick Muriuki Muriithi
2023-06-06Pjotr tasks listPjotr Prins
2023-06-06Pjotr tasks listPjotr Prins
2023-06-06Add troubleshooting notes.Frederick Muriuki Muriithi
2023-06-06Add new issue regarding python3.10 upgrade in guixMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-06-05Issue: Add note on GN3 config.Frederick Muriuki Muriithi
2023-06-05issue: Proposition for more flexible configs.Frederick Muriuki Muriithi
2023-06-05Docs: Indicate how to run utility scripts for CI/CD containersFrederick Muriuki Muriithi
2023-06-05bug: CI/CD: Process running under host user not container userFrederick Muriuki Muriithi
Expected GN3 to run under "genenetwork" user inside container, instead it runs under host user with UID 1000.
2023-06-03pjotr tasksPjotr Prins
2023-06-03pjotr tasksPjotr Prins
2023-06-03Reduced issue priority. Task mostly done.Pjotr Prins
2023-06-01issues: Rebuild xapian index conditionally.Arun Isaac
2023-06-01Create configurations.gmizsloan
Create documentation for the nginx configurations related to the using the GN3 web endpoints
2023-05-30Update docs on registering/setting user as sysadminFrederick Muriuki Muriithi
2023-05-30Close issue as completed.Frederick Muriuki Muriithi
2023-05-30Update docs on registering OAuth2 clients.Frederick Muriuki Muriithi
2023-05-29Add exampleMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-29Update sparql examplesMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-29Add more examplesMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-29Group GeneRIF metadata under one columnMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-29topics: auth: document utility scripts and OAuth2 clientsFrederick Muriuki Muriithi
2023-05-28Note on utf8 conversionPjotr Prins
2023-05-28mariadb indexingPjotr Prins
2023-05-27Started on opensmtpd containerPjotr Prins
2023-05-27notesPjotr Prins
2023-05-24issues: Make Existing Data Public View: New issueFrederick Muriuki Muriithi
2023-05-23Edit tasksPjotr Prins
2023-05-23Move issues and close danaPjotr Prins
2023-05-23Close issue as completedFrederick Muriuki Muriithi
2023-05-22Close issues. New issue.Frederick Muriuki Muriithi
* issues/authentication_authorisation/enable-user-masquerade.gmi: New issue: Enable User Masquerade * issues/authentication_authorisation/migrate-user-accounts-from-redis.gmi Close issue: WONTFIX * issues/authentication_authorisation/migrate-user-collections.gmi: Close issue: completed * issues/authentication_authorisation/use-authorisation-code-flow-for-authentication.gmi Close issue: completed
2023-05-22Add missing example.Frederick Muriuki Muriithi
2023-05-22Add documentation on running flask under pdbFrederick Muriuki Muriithi
2023-05-20pjotr tasksPjotr Prins
2023-05-18Rename topicMunyoki Kilyungi
This fixes the error: Resource not found: /topics/aws/README Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-18Fix broken linksMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-18Fix broken linksMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-18Rename file and update associated linksMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-18Create new GN3 endpoints for phenotypes, genotypes and probesetsMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-15add AWS notes for creating VMs thereAndreaGuarracino
2023-05-11issues: Add notes on anonymous collectionsFrederick Muriuki Muriithi
2023-05-10issue: Update migration steps for user collectionsFrederick Muriuki Muriithi
With the knowledge of the format of user accounts in redis, provide a new set of steps for migrating user collections.
2023-05-10issue: Provide data format for user accounts in redisFrederick Muriuki Muriithi
Update the issue with the data format for the user accounts as stored in redis.
2023-05-09Add new issue on incorrect pmidsMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-08issues: Add details to "migrate user accounts from redis"Frederick Muriuki Muriithi
Add some more information on possible route to migrate the user details.
2023-05-08issues: New issue: Migrate User CollectionsFrederick Muriuki Muriithi
2023-05-08Issues: New issue: Authorisation Code FlowFrederick Muriuki Muriithi
Add an issue detailing the current state and calling for the move over to the "Authorisation Code Flow" for better security and to enable easier integration with other applications.
2023-05-05Document xapian search code architecture.Arun Isaac
2023-05-03Fix headingMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2023-05-03Update issueMunyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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