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Diffstat (limited to 'topics')
| -rw-r--r-- | topics/setting-up-local-development-database.gmi | 29 |
1 files changed, 25 insertions, 4 deletions
diff --git a/topics/setting-up-local-development-database.gmi b/topics/setting-up-local-development-database.gmi index a6fdb5e..13946e7 100644 --- a/topics/setting-up-local-development-database.gmi +++ b/topics/setting-up-local-development-database.gmi @@ -1,14 +1,35 @@ # Setting up Local Development Database -## Introduction +You need to set up a quick local database for development without polluting your environment. -You need to set up a quick local database for development without needing root permissions and polluting your environment. +## Method 1 (Using Guix) + +Setting up mariadb in a Guix container is the preferred and easier method. But, you need root access to run the container. The genenetwork2 repo comes with a guix system container definition to run MariaDB and Redis. From the genenetwork2 repo, you can build and run the container using: +``` +$ sudo $(./containers/db-container.sh) +``` +You should now be able to connect to the database using +``` +$ mysql --protocol tcp -u root +``` +Create a database db_webqtl_s +``` +MariaDB [mysql]> CREATE DATABASE db_webqtl_s; +``` +Load the small database dump into the database. You may find the small database on tux02 at /home/aruni/gn2.sql.lz +``` +$ lzip -cd gn2.sql.lz | mysql --protocol tcp -u root db_webqtl_s +``` +Since this is a develpoment server accessible only from localhost, it is ok to use the root user with no password. Configure your development instance of genenetwork2 with the following SQL_URI. +``` +SQL_URI="mysql://root@127.0.0.1:3306/db_webqtl_s" +``` + +## Method 2 (Manual method without Guix) * An assumption is made that the GeneNetwork2 profile is in ~/opt/gn_profiles/gn2_latest for the purposes of this documentation. Please replace as appropriate. * We install the database files under ~/genenetwork/mariadb. Change as appropriate. -## Set up Database Server - Set up directories ``` |