diff options
Diffstat (limited to 'topics')
| -rw-r--r-- | topics/gn1-migration-to-gn2/partial-correlations.gmi | 17 |
1 files changed, 16 insertions, 1 deletions
diff --git a/topics/gn1-migration-to-gn2/partial-correlations.gmi b/topics/gn1-migration-to-gn2/partial-correlations.gmi index f6c103d..a5593a8 100644 --- a/topics/gn1-migration-to-gn2/partial-correlations.gmi +++ b/topics/gn1-migration-to-gn2/partial-correlations.gmi @@ -58,9 +58,24 @@ There is no indication,on the UI, of the difference between the **Pearson's r** The user can also select the total number of results to return -#### Possible Correlation Errors +##### Possible Correlation Errors * Tissue Correlation Error * Literature Correlation Error Maybe there is even a **Genetic Correlation Error**, but I am yet to run into it - I am simply extrapolating from my exploration with the existing system. + +#### Code Exploration + +These are some of the (possibly) relevant files in GN1 unearthed so far: + +* /web/webqtl/main.py: Entry-point -> goes to SearchResultPage then the ShowTraitPage/Collections page +* /web/webqtl/correlation/PartialCorrInputPage.py: from collections on clicking "Partial" +* /web/webqtl/cmdLine/cmdPartialCorrelationPage.py: from PartialCorrInputPage on clicking "Calculate" in the form in the second half of the page +* /web/webqtl/correlation/PartialCorrTraitPage.py: from PartialCorrInputPage on clicking "Pearson's r" or "Spearman's rho" buttons in the first half of the page +* /web/webqtl/correlation/PartialCorrDBPage.py: from cmdPartialCorrelationPage: form data is saved to file and used via CLI to compute the correlations - This seems to be the results page + +The relevant javascript files used on GN1 are: + +* webqtl.js: see `databaseFunc` and `validateTrait` functions +* jqueryFunction.js: see `validateTraitNumber` function |