diff options
Diffstat (limited to 'topics')
| -rw-r--r-- | topics/genotype-database.gmi | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/topics/genotype-database.gmi b/topics/genotype-database.gmi index ea3db7c..5828b77 100644 --- a/topics/genotype-database.gmi +++ b/topics/genotype-database.gmi @@ -9,12 +9,13 @@ To convert a plain text GeneNetwork genotype file `BXD.geno` to a genodb genotyp ``` => https://git.genenetwork.org/GeneNetwork/cl-gn cl-gn -genenetwork3 includes a tiny Python library to read the built genodb database. Here is a sample invocation reading row 17 and column 13 from a database at `/tmp/bxd`. +genenetwork3 includes a tiny Python library to read the built genodb database. Here is a sample invocation reading the entire matrix, row 17 and column 13 from a database at `/tmp/bxd`. ``` from gn3 import genodb with genodb.open('/tmp/bxd') as db: matrix = genodb.matrix(db) + print(genodb.nparray(matrix)) print(genodb.row(matrix, 17)) print(genodb.column(matrix, 13)) ``` |