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Diffstat (limited to 'topics')
| -rw-r--r-- | topics/gn1-migration-to-gn2/clustering.gmi | 29 | ||||
| -rw-r--r-- | topics/gn1-migration-to-gn2/heatmap.png | bin | 0 -> 338943 bytes |
2 files changed, 29 insertions, 0 deletions
diff --git a/topics/gn1-migration-to-gn2/clustering.gmi b/topics/gn1-migration-to-gn2/clustering.gmi new file mode 100644 index 0000000..c2c3ff4 --- /dev/null +++ b/topics/gn1-migration-to-gn2/clustering.gmi @@ -0,0 +1,29 @@ +# Migrate GN1 Clustering + +GeneNetwork1 has clustering output that we want to migrate to GN2. For example, go to + +=> http://gn1-lily.genenetwork.org/ GN1 on Lily + +Select Type -> CRTD mRNA data and do a search for 'synap*'. Click on the top 10 results checkboxes and Add to the basket (add is an icon). Now click on 'Select all' and the 'Heat map' icons. Computation may take a while. + +Next click on 'Cluster traits' and 'Redraw' map. This is the one we want in GN3/GN2! + +=> ./heatmap.png + +## Members + +* fredm +* pjotr + +## Useful links + +=> https://github.com/genenetwork/genenetwork1/tree/master/web/webqtl/heatmap Implementation + +## Implementation + +As a first step the computations should move to GN3 with proper regression/unit testing scripts. Next wire them up as REST API endpoints and add it to the GN2 web interface: + +- [ ] Move computation to GN3 +- [ ] Create REST API endpoints +- [ ] Add regression/unit tests in GN3 +- [ ] Add to GN2 web interface diff --git a/topics/gn1-migration-to-gn2/heatmap.png b/topics/gn1-migration-to-gn2/heatmap.png Binary files differnew file mode 100644 index 0000000..ffa4701 --- /dev/null +++ b/topics/gn1-migration-to-gn2/heatmap.png |
