diff options
Diffstat (limited to 'topics')
| -rw-r--r-- | topics/meetings/jnduli_bmunyoki.gmi | 52 |
1 files changed, 41 insertions, 11 deletions
diff --git a/topics/meetings/jnduli_bmunyoki.gmi b/topics/meetings/jnduli_bmunyoki.gmi index 1038940..7f58e6d 100644 --- a/topics/meetings/jnduli_bmunyoki.gmi +++ b/topics/meetings/jnduli_bmunyoki.gmi @@ -1,25 +1,55 @@ # Meeting Notes +## 2024-07-19 +Plan for this week: + +* @jgart getting genecup app to run in a guix container i.e. `gunicorn service` should then run `genecup`, similar to how gn2 and gn-uploader work. +* @jgart enable acme certificates. +* @bmunyoki virtuoso and xapian are up-to-date in prod +* @bmunyoki update RIF+WIKI on SQL and RDF from gn2 website +* @bmunyoki fix CI job for GN transformer database i.e. instead of checksums just run full job once per month +* @bmunyoki and @shelby review dissertation for Masters +* @alexm rewrite UI code using htmx +* @alexm address review comments in markdown parser +* @shelby compile ingesting 500 more papers into RAG engine +* @shelby ingesting ageing research into the RAG engine +* @shelby RAG engine only works with OpenAI, figure out Claude Sonnet integration +* @shelby @bmunyoki @alexm to define the problem with RDF triple stores +* @jnduli finish up on RIF update +* @jnduli get up to speed on gn-auth + +AOB + +* RAG engine uses R2R for the integration. It would be great if we could integrate this into guix. @shelby will send @jgart the paper on how we use the RAG. + +TUXO2: + +* Use guix inside your own profile, not the global guix. +* + + + + ## 2024-07-12 Plan for this week: -* @shelby use Claude Sonnet with R2R RAG engine with 1000 papers and fix bugs. -* @shelby final run through for paper 1 before Pjotr's review -* @shelby and @bmunyoki review dissertation paper for Masters +* @shelby use Claude Sonnet with R2R RAG engine with 1000 papers and fix bugs: 500 papers ingested into R2R, remaining with 500. +* @shelby final run through for paper 1 before Pjotr's review. DONE, configurations fixed. New repo gnai that contains the results and will contain R2R stuff. +* NOT DONE: @shelby and @bmunyoki review dissertation paper for Masters * @shelby @bmunyoki @alexm to define the problem with RDF triple stores -* @alexm integrate the markdown parser -* @alexm rewrite UI code using htmx -* @bmunyoki investigate why xapian index isn't getting rebuilt -* @bmunyoki investigate discrepancies between wiki and rif search -* @jnduli update the generif_basic table from NCBI -* @jnduli blog post of preference for documentation +* @alexm integrate the markdown parser: DONE, patches sent to Boni +* @alexm rewrite UI code using htmx: NOT DONE +* @bmunyoki investigate why xapian index isn't getting rebuilt: DONE +* @bmunyoki investigate discrepancies between wiki and rif search: DONE, get this to prod to be tested +* @jnduli update the generif_basic table from NCBI: IN PROGRESS. +* @jnduli blog post of preference for documentation: DONE. We have qa.genenetwork.com. We need to have this set up to `qa.genenetwork.com/paper1` so that we always have the system that was used for this. How? Nice to Haves -* @bmunyoki Nice to have tag for paper1 -* @bmunyoki fix CI job that transforms gn tables to TTL +* @bmunyoki Nice to have tag for paper1: Fix this with Boni and get done later on/iron them out then. +* @bmunyoki fix CI job that transforms gn tables to TTL: Move this to running a cron job once per month instead of ## 2024-06-24 |