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-rw-r--r--topics/systems/fallbacks-and-backups.gmi6
-rw-r--r--topics/systems/gn-services.gmi8
-rw-r--r--topics/systems/sheepdog.gmi5
-rw-r--r--topics/systems/shepherd.gmi14
-rw-r--r--topics/systems/virtuoso.gmi13
5 files changed, 40 insertions, 6 deletions
diff --git a/topics/systems/fallbacks-and-backups.gmi b/topics/systems/fallbacks-and-backups.gmi
index 302a8af..1a22db9 100644
--- a/topics/systems/fallbacks-and-backups.gmi
+++ b/topics/systems/fallbacks-and-backups.gmi
@@ -4,9 +4,11 @@ As a hurricane is barreling towards our machine room in Memphis we are checking
## Tags
-* enhancement
-* deploy
+* type: enhancement
* assigned: pjotrp
+* keywords: systems, fallback, backup, deploy
+* status: in progress
+* priority: critical
## Tasks
diff --git a/topics/systems/gn-services.gmi b/topics/systems/gn-services.gmi
index 334bb5c..6f9f7fd 100644
--- a/topics/systems/gn-services.gmi
+++ b/topics/systems/gn-services.gmi
@@ -1,5 +1,13 @@
# GN Services
+## Tags
+
+* type: documentation
+* status: in progress
+* keywords: gn services, documentation
+
+## Description
+
In addition to gn1 and gn2 we have 3 running gn3 services:
1. gn-proxy - deployed as gn3 user in production
diff --git a/topics/systems/sheepdog.gmi b/topics/systems/sheepdog.gmi
index 137a5dd..5285553 100644
--- a/topics/systems/sheepdog.gmi
+++ b/topics/systems/sheepdog.gmi
@@ -8,7 +8,10 @@ that need resolving at some point.
## Tags
* assigned: pjotrp
-* enhancement
+* type: enhancement
+* status: in progress, halted
+* priority: medium
+* keywords: system, sheepdog
## Tasks
diff --git a/topics/systems/shepherd.gmi b/topics/systems/shepherd.gmi
index 5f9ca4f..ea5f10b 100644
--- a/topics/systems/shepherd.gmi
+++ b/topics/systems/shepherd.gmi
@@ -1,5 +1,15 @@
# Shepherd
+## Tags
+
+* assigned: ??
+* type: documentation
+* keywords: system, shepherd
+* status: unclear
+* priority: unclear
+
+## Description
+
On Debian based systems we run shepherd as a shepherd user. The service gets started up through systemd:
```
@@ -18,3 +28,7 @@ WantedBy=multi-user.target
```
=> https://git.genenetwork.org/efraim/shepherd-services Running shepherd services
+
+## Notes
+
+This seems to be documentation, and not necessarily a task, issue or enhancement to be worked on
diff --git a/topics/systems/virtuoso.gmi b/topics/systems/virtuoso.gmi
index 187f961..05819e1 100644
--- a/topics/systems/virtuoso.gmi
+++ b/topics/systems/virtuoso.gmi
@@ -1,5 +1,12 @@
# Running Virtuoso
+## Tags
+
+* type: documentation
+* status: unclear
+
+## Description
+
We run instances of Virtuoso for our graph databases. Virtuoso is a remarkable software and running some really large databases, including Uniprot
=> https://github.com/openlink/virtuoso-opensource
@@ -17,7 +24,7 @@ guix environment --ad-hoc virtuoso-ose -- virtuoso-t -f
The database is initialized from 'penguin2:/export/virtuoso/var/lib/virtuoso/db/virtuoso.ini'
-## Running a new instance
+### Running a new instance
For testing we want to run a temporary instance. Let's start from the virtuoso.ini file:
@@ -58,7 +65,7 @@ ssh -L 28890:127.0.0.1:28890 -f -N myname@penguin2.genenetwork.org
and surf to http://localhost:28890/conductor. A good time to change the default password (dba:dba)!
-## Uploading data with CURL
+### Uploading data with CURL
To upload RDF I use rapper to validate the data. First delete the existing graph with something like
@@ -76,7 +83,7 @@ Where BioHackrXiv is the name of the graph (in this example). A python version c
=> https://github.com/pubseq/bh20-seq-resource/blob/master/scripts/update_virtuoso/check_for_updates.py
-## Virtuoso.ini
+### Virtuoso.ini
What changed in $HOME/services/virtuoso/virtuoso.ini