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diff --git a/topics/systems/update-production-tux01.gmi b/topics/systems/update-production-tux01.gmi new file mode 100644 index 0000000..ea99527 --- /dev/null +++ b/topics/systems/update-production-tux01.gmi @@ -0,0 +1,51 @@ +# Update production + +In this document we describe the specific steps required to update production. + +# Virtuoso RDF + +Once we have an RDF dump of the database in a file 'data.ttl' we can test it for correctness with: + +``` +tux01:~$ rapper --input turtle --count dump.ttl +rapper: Parsing URI file:///home/wrk/dump.ttl with parser turtle +rapper: Parsing returned 652395 triples +``` + +Test the virtuoso endpoint with + +``` +curl http://localhost:8892/sparql +``` + +Then, upload it to a virtuoso SPARQL endpoint running at port 8892 + +``` +curl -v -X PUT --digest -u dba:password -T data.ttl -G http://localhost:8892/sparql-graph-crud-auth --data-urlencode graph=http://genenetwork.org +``` + +To test + +``` +curl "http://localhost:8892/sparql?default-graph-uri=&query=prefix+gn%3A+%3Chttp%3A%2F%2Fgenenetwork.org%2F%3E+%0D%0A%0D%0ASELECT+distinct+*+WHERE+%7B%3Fu++gn%3AbinomialName+%3Fo%7D&format=application%2Fsparql-results%2Bjson&timeout=0&signal_void=on" +``` + +and you should see the data: + +```js + { + "u": { + "type": "uri", + "value": "http://genenetwork.org/inbredSet_srxshrspf2" + }, + "o": { + "type": "literal", + "value": "UIOWA SRxSHRSP F2" + } + }, + ... +``` + +For more information see + +=> ./virtuoso.gmi Virtuoso setup documentation |