diff options
Diffstat (limited to 'topics/lmms')
-rw-r--r-- | topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi | 8 |
1 files changed, 6 insertions, 2 deletions
diff --git a/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi b/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi index ce9c0dc..966b44c 100644 --- a/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi +++ b/topics/lmms/rqtl2/gn-rqtl-design-implementation.gmi @@ -35,6 +35,7 @@ This component involves creating a monitoring system to track the state of the e ## Deep Dive + ### Running the External Script The RQTL implementation is in R, and we need a strategy for executing this script as an external process. This can be subdivided into several key steps: @@ -64,8 +65,9 @@ This will involve: ## Additional UI Considerations We need to rethink where to output the external process logs in the UI. Currently, we can add flags to the URL to enable this functionality, e.g., `URL/page&flags&console=1`. Also the design suggestion is to out the results in a terminal emulator for -example xterm -See more: https://xtermjs.org/ +example xterm ,See more: https://xtermjs.org/, A current implementation already exists +for gn3 see +=> https://github.com/genenetwork/genenetwork2/blob/abe324888fc3942d4b3469ec8d1ce2c7dcbd8a93/gn2/wqflask/templates/wgcna_setup.html#L89 ### Current Design Suggestions: #### With HTMX, offer a split screen @@ -74,6 +76,8 @@ This will include an output page and a monitoring system page. #### Popup button for preview A button that allows users to preview and hide the console output. + + ## Long-Term Goals We aim to run computations on clusters rather than locally. This project will serve as a pioneer for that approach. |