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Diffstat (limited to 'topics/gn-uploader/indicating-heterozygosity.gmi')
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diff --git a/topics/gn-uploader/indicating-heterozygosity.gmi b/topics/gn-uploader/indicating-heterozygosity.gmi new file mode 100644 index 0000000..9d6a8c2 --- /dev/null +++ b/topics/gn-uploader/indicating-heterozygosity.gmi @@ -0,0 +1,27 @@ +# Indicating Heterozygosity + +## Tags + +* status: ongoing +* assigned: fredm, zachs, acenteno +* type: documentation +* priority: medium +* keywords: doc, documentation, heterozygous, hererozygosity + +## Description + +For GeneNetwork, we indicate the the allele values in one of two formats: + +``` +|--------------|----------|----------| +| Source | Format 1 | Format 2 | +|--------------|----------|----------| +| Founder | 0 | 0 | +| Heterozygous | 1 | 0.5 | +| Other | 2 | 1 | +|--------------|----------|----------| +``` + +Values outside of these are considered an error. + +These values are stored in the GenoData table. |