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Diffstat (limited to 'topics/biohackathon/GNGSoC2023.gmi')
| -rw-r--r-- | topics/biohackathon/GNGSoC2023.gmi | 33 |
1 files changed, 31 insertions, 2 deletions
diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi index 2ede8f7..23b12f8 100644 --- a/topics/biohackathon/GNGSoC2023.gmi +++ b/topics/biohackathon/GNGSoC2023.gmi @@ -72,6 +72,11 @@ git repo genenetwork-machines, guix-bioinformatics * cgit deployment at https://git.genenetwork.org/ * guix forge +### Week 9 + +* Discussion on importers for guix forge +* Talked about propagator networks - part of Seattle presentation + ### More => https://ci.genenetwork.org/jobs/guix-bioinformatics @@ -140,6 +145,13 @@ git repo genenetwork3 * Transformed most tables now * guile-lmdb started by Alex +### Week 9 + +* New renaming and modelling +* GeneRif +* Working on unique IDs +* SKOS + ## LLMs & metadata (RDF) * lead: Shelby @@ -193,6 +205,11 @@ git repo genenetwork3 * Working prototype! * references as JSON +### Week 9 + +* Shelby showed working references and challenges +* System is ready for viewing by Rob + ## API to access data from GN * lead: Rupert @@ -253,8 +270,12 @@ git repo gn-docs & genenetwork3 & SPARQL ### Week 8 -- R script to parse API by Rupert -- Move forward with populations/strains and datasets +* R script to parse API by Rupert +* Move forward with populations/strains and datasets + +### Week 9 + +* Progressed API software to include groups ## Editing data @@ -294,6 +315,10 @@ git repo gn-docs & genenetwork3 & SPARQL * gn-auth is building locally and needs to go on the forge * case attributes +### Week 9 + +* gn-auth continuation +* case-attribute editing progress and challenges ## Guix parametrization @@ -336,6 +361,10 @@ git repo gn-docs & genenetwork3 & SPARQL * Milestone on dependencies! +### Week 9 + +* Sarthak showed us the working prototype + ## Links * Matrix room is GNSoC2023 |