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Diffstat (limited to 'topics/biohackathon/GNGSoC2023.gmi')
| -rw-r--r-- | topics/biohackathon/GNGSoC2023.gmi | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/topics/biohackathon/GNGSoC2023.gmi b/topics/biohackathon/GNGSoC2023.gmi index 8fe7310..8df2039 100644 --- a/topics/biohackathon/GNGSoC2023.gmi +++ b/topics/biohackathon/GNGSoC2023.gmi @@ -47,6 +47,13 @@ git repo genenetwork-machines, guix-bioinformatics * Efraim is doing channels for GN2 and GN3 * Sarthak will try to run guix-forge +### Week 4 + +* Arun added channels to CI +* localhost +* cgit +* Efraim: gn2 -> channel; Arun tested + ### More => https://ci.genenetwork.org/jobs/guix-bioinformatics @@ -87,6 +94,14 @@ git repo genenetwork3 * Bonface demoes new documentation & code +### Week 4 + +* Settled on prefixes terms and id +* Updated man pages +=> https://github.com/genenetwork/gn-docs/tree/master/rdf-documentation +* Started work on lmdb+guile: +=> https://github.com/BonfaceKilz/gn-data-vault + ## LLMs & metadata (RDF) * lead: Shelby @@ -116,6 +131,13 @@ git repo genenetwork3 * Priscilla is working on SLA and document acquisition * Hosting GN Q&A +### Week 4 + +* working on container +* fetched 1000 publication +* JSON documentation on references + + ## API to access data from GN * lead: Rupert @@ -154,6 +176,12 @@ git repo gn-docs & genenetwork3 & SPARQL => https://github.com/genenetwork/gn-docs/blob/master/api/alternative-API-structure.md +### Week 4 + +* Start working on endpoints +* R api - reference GN/API +* synteny + ## Editing data * lead: Fred @@ -170,6 +198,11 @@ git repo gn-docs & genenetwork3 & SPARQL * Fixing issues * Meeting on requirements from Arthur and Zach +### Week 4 + +* Editing works! +* Discussed the approval procedure and edit button for everyone + ## Guix parametrization * lead: Sarthak @@ -191,6 +224,10 @@ git repo gn-docs & genenetwork3 & SPARQL * Preparing for BLOG on S-exp +### Week 4 + +* BLOG in a stage that we discuss naming conventions + ## Links * Matrix room is GNSoC2023 |